CATH Domain: 1ukvY00 XML data for domain: 1ukvY00

Molscript image for 1ukvY00
1ukvY00
PDB coordinates for domain 1ukvY00

PDB 1ukv, Chain Y, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.300 P-loop containing nucleotide triphosphate hydrolases Gene3D
3.40.50.300.20
3.40.50.300.20.1
3.40.50.300.20.1.1
3.40.50.300.20.1.1.1
3.40.50.300.20.1.1.1.1

Segment boundaries for domain 1ukvY00

Chopping figure for domain 1ukvY00
DomainStart PDB ResidueStop PDB Residue
1ukvY00 3 206

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.50.300.20.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x3sA00 89.92 Ras-related protein Rab-18IntracellularHomo sapiens 3.40.50.300 175 41 86 1.84 2.12
1z0jA00 89.10 Ras-related protein Rab-22AMus musculusGTPase activityGTP bindingProtein binding 3.40.50.300 169 39 85 1.95 2.27
1wmsA00 89.04 Ras-related protein Rab-9ALysosomeGTP bindingProtein bindingGDP binding 3.40.50.300 170 38 83 2.09 2.50
1z2aA00 88.19 Mus musculusRegulation of smoothened signaling pathwaySpinal cord dorsal/ventral patterningRas-related protein Rab-23Negative regulation of proteolysis 3.40.50.300 164 34 83 1.59 1.91
1xtqA00 88.14 Insulin signaling pathwayMTOR signaling pathwayGTP-binding protein RhebGTPase activityGTP binding 3.40.50.300 169 27 85 2.01 2.36
1mh1A00 87.95 MAPK signaling pathwayNatural killer cell mediated cytotoxicityVEGF signaling pathwayFocal adhesionToll-like receptor signaling pathway 3.40.50.300 183 26 85 2.47 2.88
2erxA00 87.53 DIRAS family, GTP-binding Ras-like 2Homo sapiensGTP-binding protein Di-Ras2 3.40.50.300 168 28 85 3.16 3.71
1m7bA00 87.40 Actin cytoskeleton organizationRho-related GTP-binding protein RhoEGTPase activityGTP bindingCell adhesion 3.40.50.300 179 24 83 2.04 2.45
3c5cB00 86.47 Ras-like protein family member 12Homo sapiensRas-like, family 12 3.40.50.300 164 24 81 2.14 2.63
2x19A00 85.76 Exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Nucleus organizationNucleusNucleocytoplasmic transportProtein binding 3.40.50.300 172 26 86 4.07 4.72
2h57B00 81.30 ADP-ribosylation factor-like 6ADP-ribosylation factor-like protein 6Homo sapiens 3.40.50.300 164 15 78 2.60 3.33
3cx8A01 81.23 Rho protein signal transductionIn utero embryonic developmentGTPase activityPlatelet activationRegulation of cell migration 3.40.50.300 193 16 80 3.93 4.87
1wb1C01 80.74 Methanococcus maripaludisMJ0495-like protein 3.40.50.300 185 11 82 3.41 4.12
1f6bB00 80.28 Cricetulus griseusGTP-binding protein SAR1b 3.40.50.300 180 17 77 3.33 4.29
1bofA01 79.62 Rattus norvegicusGuanine nucleotide-binding protein G(i) subunit alpha-1Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptideChagas diseaseChemokine signaling pathway 3.40.50.300 203 15 74 3.16 4.25
1nrjB00 79.39 SRP-dependent cotranslational protein targeting to membraneGTP bindingSignal recognition particle receptor subunit betaProtein bindingIntegral to endoplasmic reticulum membrane 3.40.50.300 191 13 77 3.61 4.65
1mkyA01 78.96 Thermotoga maritimaGTP-binding proteinGTP-binding protein engA 3.40.50.300 153 16 74 3.56 4.80
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|1ukvY00
SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH
GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF
LTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLC    

Domain COMBS Sequence

>pdb|1ukvY00
MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG
SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED
AFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:59

Cut based on decision in database "DomChop" on "cathdb"