CATH Domain: 1ucrB00 XML data for domain: 1ucrB00

Molscript image for 1ucrB00
1ucrB00
PDB coordinates for domain 1ucrB00

PDB 1ucr, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.2
1.10.10.10.2.1
1.10.10.10.2.1.1
1.10.10.10.2.1.1.1
1.10.10.10.2.1.1.1.1

[top]
Segment boundaries for domain 1ucrB00

Chopping figure for domain 1ucrB00
DomainStart PDB ResidueStop PDB Residue
1ucrB00 1 75

Structural Neighbourhood (70 entries)

There are 70 matching structural neighberhood comparisons for CATH ID 1.10.10.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 70 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1qbjC00 87.76 CytoplasmNucleolusHomo sapiensDouble-stranded RNA-specific adenosine deaminaseBase conversion or substitution editing 1.10.10.10 66 16 85 2.41 2.83
3bz6A02 87.45 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0502 protein PSPTO_2686 1.10.10.10 76 10 89 2.31 2.58
1s3jA02 87.27 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 9 79 1.69 2.12
1sfuA00 86.91 Yaba-like disease virus34L protein 1.10.10.10 70 10 89 3.20 3.59
1lvaA02 86.72 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 69 11 82 2.24 2.72
2o0yB01 86.42 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 64 9 81 2.31 2.85
2heoA00 86.17 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 13 79 1.86 2.33
2ia2C01 86.12 Rhodococcus sp. DK17PcaR 1.10.10.10 60 11 78 1.94 2.48
1hstA00 86.01 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 9 87 2.96 3.37
3cuqB03 85.92 Homo sapiensVacuolar protein-sorting-associated protein 36ESCRT-II complex subunit VPS36Endocytosis 1.10.10.10 69 14 89 2.98 3.34
1dpuA00 85.76 DNA-dependent DNA replicationReplication protein A 32 kDa subunitNucleotide excision repairDNA replicationReplication factor A2 1.10.10.10 69 13 87 3.09 3.52
1ldjA06 85.72 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 68 11 79 2.87 3.60
2jt1A00 85.69 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 16 89 2.77 3.11
1lvaA03 85.51 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 62 16 79 2.29 2.87
1lddA00 85.42 Mitotic sister chromatid segregationProtein ubiquitinationCyclin catabolic processMeiosis - yeastAnaphase-promoting complex subunit 2 1.10.10.10 74 8 78 2.03 2.59
1u5tB02 85.40 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 14 82 2.14 2.60
1lvaA01 85.31 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 59 5 79 2.08 2.61
2o0yC01 85.26 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 73 8 78 2.03 2.59
2ia2D01 85.23 Rhodococcus sp. DK17PcaR 1.10.10.10 57 10 72 2.01 2.75
2hr3D02 85.08 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 8 81 1.91 2.36
1z05A01 84.83 Vibrio choleraeTranscriptional regulator, ROK family 1.10.10.10 72 8 83 2.90 3.46
3bz6A01 84.75 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0502 protein PSPTO_2686 1.10.10.10 88 9 79 3.77 4.74
1w1wE00 84.75 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 8 87 3.63 4.13
1jhfA02 84.74 Repressor LexA [EC:3.4.21.88]TranscriptionDNA bindingLexA repressorTranscription repressor activity 1.10.10.10 69 14 85 2.31 2.71
3cuqA03 84.08 Transcription factor bindingTranscription factor complexRNA polymerase II transcription factor activityEndocytosisESCRT-II complex subunit VPS22 1.10.10.10 80 6 86 3.44 3.99
2ns0A00 84.03 Rhodococcus jostii RHA1Putative uncharacterized protein 1.10.10.10 82 9 80 3.16 3.93
1oyiA00 83.59 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 14 83 2.45 2.92
1lvaA04 83.45 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 60 13 77 2.44 3.17
1ku9A01 83.36 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.10.10 83 12 72 1.88 2.60
1hw5A02 83.09 TranscriptionTranscription activator activityTranscription repressor activityCRP/FNR family transcriptional regulator, cyclic AMP receptor proteinCatabolite gene activator 1.10.10.10 68 7 78 2.56 3.27
3edpA01 83.05 Listeria innocuaLin2111 protein 1.10.10.10 75 9 92 4.13 4.49
3cuqA02 83.03 ESCRT-II complex subunit VPS22Transcription factor bindingRegulation of transcription from RNA polymerase II promoterHomo sapiensVacuolar-sorting protein SNF8 1.10.10.10 81 6 80 2.59 3.23
1q1hA00 82.85 Sulfolobus solfataricusTranscription initiation factor TFIIE alpha subunitTranscription factor EBasal transcription factors 1.10.10.10 85 9 78 2.66 3.37
1xb4B02 82.62 Protein targeting to vacuoleESCRT-II complex subunit VPS25Saccharomyces cerevisiaeESCRT II complexVacuolar protein-sorting-associated protein 25 1.10.10.10 75 4 85 3.00 3.52
1j5yA01 82.36 Thermotoga maritimaTranscriptional regulator, biotin repressor family 1.10.10.10 64 14 82 2.79 3.38
2od5A00 82.33 1.10.10.10 82 6 76 2.81 3.66
1hw1A01 82.24 Fatty acid metabolism regulator proteinGntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabAEscherichia coli K-12 1.10.10.10 75 8 89 4.08 4.57
2dbbB01 82.15 Pyrococcus horikoshiiUncharacterized HTH-type transcriptional regulator PH0061 1.10.10.10 55 9 70 2.38 3.39
2ia0A01 81.87 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 1.10.10.10 54 5 71 2.30 3.21
1cf7A00 81.82 Protein domain specific bindingTranscription factor bindingE2F transcription factor 4/5Transcription factor E2F4TGF-beta signaling pathway 1.10.10.10 67 14 81 2.42 2.98
1cf7B00 81.69 Protein domain specific bindingTranscription factor Dp-2Transcription cofactor activityHomo sapiens 1.10.10.10 82 12 73 3.47 4.74
2hoeA01 81.59 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 8 74 2.41 3.24
2w25A01 81.47 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 1.10.10.10 52 11 70 2.57 3.66
1biaA01 81.31 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 1.10.10.10 64 12 83 2.97 3.54
1e17A00 81.03 Transcription factor bindingNucleusCell cycle arrestForkhead box protein O4Insulin receptor signaling pathway 1.10.10.10 90 8 71 3.42 4.81
3dfgA01 81.01 Xanthomonas campestris pv. campestrisRegulatory proteinRegulatory protein recX 1.10.10.10 48 6 60 2.20 3.62
3by6C01 80.81 GntR family transcriptional regulatorOenococcus oeni PSU-1Transcriptional regulator, GntR family 1.10.10.10 77 8 81 3.63 4.44
3bwgB01 80.79 GntR family transcriptional regulator, transcriptional regulator of bglABacillus subtilisUncharacterized HTH-type transcriptional regulator yydK 1.10.10.10 68 4 79 3.42 4.29
2p5vA01 80.65 Neisseria meningitidis serogroup BTranscriptional regulator, AsnC familyLrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 1.10.10.10 52 7 70 2.82 4.01
2r3sB01 80.19 1.10.10.10 76 8 71 3.29 4.63
1hsjA03 80.07 Staphylococcus aureus subsp. aureus NCTC 8325HTH-type transcriptional regulator sarR 1.10.10.10 82 5 62 1.60 2.57
3c18A03 79.83 Exiguobacterium sibiricum 255-15Putative uncharacterized protein 1.10.10.10 54 3 64 2.31 3.56
1d8jA00 79.35 Basal transcription factorsTranscription initiation factor IIE subunit betaTranscription initiation factor TFIIE beta subunitHomo sapiensProtein binding 1.10.10.10 81 18 82 3.69 4.46
1ufmA00 79.14 COP9 signalosome complex subunit 4Mus musculusProtein bindingSignalosome 1.10.10.10 84 6 80 3.50 4.32
1ldjA07 78.85 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 105 10 58 2.29 3.94
1kgsA02 78.73 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 1.10.10.10 97 4 62 2.89 4.60
3c7jA01 78.69 Pseudomonas syringae pv. syringaeRegulatory protein GntR 1.10.10.10 87 12 71 3.36 4.71
1p2fA02 78.68 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 1.10.10.10 94 9 63 2.70 4.23
1u5tB01 78.49 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 85 8 76 3.13 4.09
2hs5A01 78.39 Rhodococcus jostii RHA1Probable transcriptional regulator, GntR family protein 1.10.10.10 67 7 75 3.18 4.20
1o57A01 77.74 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 2 85 3.92 4.60
3cuqD00 76.97 ESCRT-II complex subunit VPS25Homo sapiensVacuolar protein-sorting-associated protein 25Endocytosis 1.10.10.570 97 10 64 2.91 4.48
1opcA00 76.79 Two-component systemTwo-component system, OmpR family, phosphate regulon response regulator OmpRTranscriptional regulatory protein ompRProtein bindingEscherichia coli K-12 1.10.10.10 99 10 62 3.02 4.82
1w4mA00 76.48 Soluble fractionInhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathwayHemopoietic progenitor cell differentiationActin cytoskeleton reorganizationRegulation of cell diameter 1.10.10.10 95 12 64 3.19 4.97
2fmlB03 76.09 MutT/nudix family proteinEnterococcus faecalis 1.10.10.10 61 13 70 2.84 4.04
2a6hF02 76.02 Thermus thermophilus HB8RNA polymerase sigma factorRNA polymerase primary sigma factor 1.10.10.10 54 11 63 3.15 4.96
1ldkB03 75.97 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 83 10 68 2.92 4.25
1a6qA02 75.94 Protein phosphatase 1AWnt receptor signaling pathwayProtein phosphatase 1A (formerly 2C) [EC:3.1.3.16]Positive regulation of transcription, DNA-dependentPositive regulation of I-kappaB kinase/NF-kappaB cascade 1.10.10.430 69 2 56 2.82 4.97
1s6lA01 75.74 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 11 70 2.83 4.03
1w0uA00 75.09 Protein homodimerization activityTelomeric repeat-binding factor 2Protein C-terminus bindingTelomeric loop formationProtection from non-homologous end joining at telomere 1.10.10.60 55 5 59 2.91 4.89
[1]
Displaying entries 1 to 70 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1ucrB00
MEEAKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSGSTTMYGLKGAGKQAAAE
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1ucrB00
MEEAKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSGSTTMYGLKGAGKQAAAEHED
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:22

Assigning to "1.10.10.10" based on similarity with "1ucrA00" (NWSI: 100, NWO: 100, SPS: 95.14, SPO: 98, RMSD: 1.29)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1ucrB00"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1ucrB00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1ucrB00"

Insertion by auto on 08 Mar 2006 21:41

Final ChopClose added based on similarity with "1ucrA" [LEE: 1, LME: 0, MR: 0, LG: 1, SS: 95.14, SI: 100, SO: 100]