CATH Domain: 1ubdC03 XML data for domain: 1ubdC03

Molscript image for 1ubdC03
1ubdC03
PDB coordinates for domain 1ubdC03

PDB 1ubd, Chain C, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.4
3.30.160.60.4.2
3.30.160.60.4.2.1
3.30.160.60.4.2.1.1
3.30.160.60.4.2.1.1.1

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Segment boundaries for domain 1ubdC03

Chopping figure for domain 1ubdC03
DomainStart PDB ResidueStop PDB Residue
1ubdC01 295 322
1ubdC02 323 349
1ubdC03 350 379
1ubdC04 380 408

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.30.160.60.4.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ubdC02 93.64 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 44 89 0.82 0.91
1x5wA01 92.98 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 39 93 1.39 1.49
1tf6A04 92.82 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 34 86 0.89 1.03
1ubdC04 92.66 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 41 93 0.85 0.91
1tf6A02 91.82 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 48 93 1.33 1.43
2drpA02 91.32 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 37 96 1.93 2.00
2adrA01 90.45 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 34 89 1.53 1.71
1bboA02 90.16 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 27 87 1.48 1.70
1tf6D01 89.82 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 27 87 2.77 3.15
1ubdC01 89.52 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 28 86 1.00 1.16
2drpA01 89.23 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 27 85 3.07 3.60
1tf3A01 89.03 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 27 90 1.42 1.58
2gliA04 88.20 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 34 83 1.53 1.82
2gliA01 85.72 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 33 20 75 1.37 1.81
1un6D02 85.42 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 13 83 1.71 2.04
2r1fA03 83.36 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 3 69 1.42 2.05
1kyqA02 83.16 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 3 67 1.28 1.89
1pjqA02 82.16 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 6 74 1.53 2.06
1llmD02 79.81 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 37 45 0.66 1.45
2b0uC03 79.43 Homo sapiensNegative regulation of transcription from RNA polymerase II promoterFollistatinPositive regulation of hair follicle developmentActivin binding 3.30.60.30 41 17 68 2.25 3.29
1fy7A01 78.36 NuA4 histone acetyltransferase complexHistone acetyltransferase HTATIP [EC:2.3.1.48]Chromatin silencing at rDNATranscription elongation, DNA-dependentPiccolo NuA4 histone acetyltransferase complex 3.30.60.60 53 10 54 1.82 3.33
1tf6A03 77.39 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 27 82 3.42 4.15
3c6mC01 77.06 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.30.160.110 44 3 59 1.76 2.98
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ubdC03
EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ubdC03
EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"