CATH Domain: 1ubdC02 XML data for domain: 1ubdC02

Molscript image for 1ubdC02
1ubdC02
PDB coordinates for domain 1ubdC02

PDB 1ubd, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.12
3.30.160.60.12.1
3.30.160.60.12.1.1
3.30.160.60.12.1.1.1
3.30.160.60.12.1.1.1.1

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Segment boundaries for domain 1ubdC02

Chopping figure for domain 1ubdC02
DomainStart PDB ResidueStop PDB Residue
1ubdC01 295 322
1ubdC02 323 349
1ubdC03 350 379
1ubdC04 380 408

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 3.30.160.60.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x5wA01 94.19 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 22 96 0.80 0.83
1tf6A04 93.25 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 51 90 0.79 0.88
1tf6A02 91.88 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 40 89 1.06 1.18
1tf6D01 90.00 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 37 81 0.90 1.10
2adrA01 89.92 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 44 93 1.81 1.94
2drpA02 89.88 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 25 89 1.34 1.49
1bboA02 89.21 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 22 87 2.15 2.47
1tf3A01 87.55 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 37 90 1.52 1.69
1tf6A03 86.06 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 22 79 1.39 1.75
1un6D02 86.00 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 11 87 1.88 2.16
1kyqA02 81.95 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 3 70 1.35 1.92
1pjqA02 81.41 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 3 74 1.77 2.38
1llmD02 78.77 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 33 47 0.74 1.57
1yuiA00 78.65 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 25 50 1.56 3.12
2b0uC03 78.37 Homo sapiensNegative regulation of transcription from RNA polymerase II promoterFollistatinPositive regulation of hair follicle developmentActivin binding 3.30.60.30 41 7 63 2.40 3.78
1ncsA00 77.26 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 22 57 1.74 3.03
3bidA01 77.06 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 3 58 1.80 3.07
1bbgA00 75.53 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 3 57 1.88 3.27
1r0rI00 75.24 Meleagris gallopavoOvomucoid 3.30.60.30 51 11 50 2.14 4.20
1b69A00 68.63 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 3 39 1.58 4.04
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ubdC02
RVHVCAECGKAFVESSKLKRHQLVHTG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ubdC02
RVHVCAECGKAFVESSKLKRHQLVHTG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"