CATH Domain: 1u9lB00 XML data for domain: 1u9lB00

Molscript image for 1u9lB00
1u9lB00
PDB coordinates for domain 1u9lB00

PDB 1u9l, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.6
1.10.150.20.6.1
1.10.150.20.6.1.1
1.10.150.20.6.1.1.1
1.10.150.20.6.1.1.1.1

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Segment boundaries for domain 1u9lB00

Chopping figure for domain 1u9lB00
DomainStart PDB ResidueStop PDB Residue
1u9lB00 352 421

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 1.10.150.20.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2i1qA01 88.56 DNA repair and recombination protein radAMethanococcus voltae 1.10.150.20 62 22 88 3.39 3.83
1y88A02 87.74 Archaeoglobus fulgidusUncharacterized protein AF_1548 1.10.150.20 59 23 84 2.05 2.43
1szpA01 87.66 DNA repair protein RAD51Identical protein bindingDouble-strand break repair via homologous recombinationHeteroduplex formationDNA-dependent ATPase activity 1.10.150.20 72 27 91 4.19 4.57
1wcnA01 85.83 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 33 85 2.17 2.53
2ztdA02 85.77 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 10 91 3.07 3.36
2z43B01 84.94 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 64 21 80 3.98 4.97
2dflA01 84.19 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 26 85 2.59 3.02
1dgsA05 83.25 DNA ligaseThermus filiformis 1.10.150.20 69 15 85 2.65 3.09
2fmpA02 82.99 DNA-dependent DNA replicationDNA-directed DNA polymerase activityDNA polymerase betaCytoplasmBase excision repair 1.10.150.20 57 24 80 3.12 3.90
1dgsA06 82.63 DNA ligaseThermus filiformis 1.10.150.20 83 18 83 3.01 3.62
3kkaD00 82.50 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 7 94 4.49 4.76
1bvsA02 82.42 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.150.20 70 12 94 3.46 3.67
1v38A00 79.98 Mus musculusSAM domain-containing protein SAMSN-1 1.10.150.50 78 18 87 4.17 4.78
1x9xA00 79.91 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 11 88 3.75 4.23
1dxsA00 79.87 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 7 78 2.71 3.45
1b4fA00 79.84 Ephrin type-B receptor 2Homo sapiensTransmembrane-ephrin receptor activity 1.10.150.50 74 7 89 4.03 4.52
1pk3A00 79.38 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 7 77 3.65 4.70
1hq1A00 78.78 Protein exportBacterial secretion systemEscherichia coli O157:H7Signal recognition particle proteinSignal recognition particle subunit SRP54 1.10.260.30 76 4 90 4.47 4.92
2q0zX02 78.50 ATP-dependent helicase activityPre-mRNA-splicing helicase BRR2 [EC:3.6.1.-]Protein bindingU5 small nuclear ribonucleoprotein 200 kDa helicaseU5 snRNP 1.10.150.20 56 10 77 3.06 3.97
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1u9lB00
AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1u9lB00
AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:45

Assigning to "1.10.150.20" based on similarity with "1u9lA00" (NWSI: 100, NWO: 100, SPS: 95.81, SPO: 97, RMSD: 0.93)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1u9lB00"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1u9lB00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1u9lB00"

Insertion by auto on 09 Mar 2006 13:23

Final ChopClose added based on similarity with "1u9lA" [LEE: 2, LME: 0, MR: 0, LG: 2, SS: 95.81, SI: 100, SO: 100]