CATH Domain: 1u8sA02 XML data for domain: 1u8sA02

Molscript image for 1u8sA02
1u8sA02
PDB coordinates for domain 1u8sA02

PDB 1u8s, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.11
3.30.70.260.11.1
3.30.70.260.11.1.1
3.30.70.260.11.1.1.1
3.30.70.260.11.1.1.1.1

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Segment boundaries for domain 1u8sA02

Chopping figure for domain 1u8sA02
DomainStart PDB ResidueStop PDB Residue
1u8sA01 2 87
1u8sA02 89 180

Structural Neighbourhood (70 entries)

There are 70 matching structural neighberhood comparisons for CATH ID 3.30.70.260.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 70 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u8sA01 89.62 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 7 96 1.98 2.05
1u0sA00 85.71 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 8 89 2.90 3.24
2qmwA03 83.68 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 15 84 2.36 2.79
2qmxA03 83.12 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 7 87 2.92 3.33
1vr6A01 82.97 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 13 85 2.83 3.30
1xmbA02 82.83 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 9 77 2.41 3.12
1jqgA01 81.95 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 7 74 2.39 3.20
1eayD00 81.45 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 80 3.45 4.26
1q5yD00 81.19 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 5 86 3.05 3.51
1vjqA00 80.87 3.30.70.340 71 5 77 2.65 3.42
2iboA00 80.74 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 4 80 2.84 3.53
2w25A02 80.64 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 13 85 3.87 4.51
1z2lA02 80.34 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.30.70.360 115 9 72 3.07 4.25
2gx8C02 80.23 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 8 73 3.65 4.96
3cedA00 80.21 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 7 73 3.32 4.54
1i1gA02 80.18 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 6 79 3.58 4.49
1earA02 80.05 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 10 72 2.90 3.99
2hiyB01 79.90 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 10 82 2.85 3.44
2nzcA00 79.86 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 9 91 3.84 4.19
1no8A00 79.70 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 6 84 3.41 4.03
2v8hA02 79.57 Beta-alanine synthaseLachancea kluyveri 3.30.70.360 116 9 71 3.00 4.19
2rb7A02 79.47 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 7 77 2.78 3.58
1rwuA00 79.37 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 8 85 3.15 3.70
2pehA01 79.31 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 7 83 3.56 4.27
2fgcA03 79.28 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 5 77 3.75 4.85
1vgyA02 79.20 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 7 70 2.66 3.79
2pd1A01 78.87 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 10 75 2.94 3.91
1rk8A00 78.71 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 8 93 4.41 4.74
1vk8A00 78.65 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 5 78 2.72 3.49
1ayeA01 78.61 Carboxypeptidase A2 [EC:3.4.17.15]Homo sapiensMetallocarboxypeptidase activityVacuolar protein catabolic processCarboxypeptidase A2 3.30.70.340 99 9 69 2.68 3.85
3ifeA02 78.52 Bacillus anthracisPeptidase TTripeptide aminopeptidase [EC:3.4.11.4] 3.30.70.360 109 10 74 3.04 4.09
2epiB00 78.46 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 10 77 3.03 3.93
1nsaA01 78.34 Sus scrofaCarboxypeptidase B [EC:3.4.17.2]Carboxypeptidase B 3.30.70.340 92 10 75 3.22 4.29
1qm9A02 78.32 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 9 86 4.29 4.96
2j8sA06 78.27 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 4 78 3.34 4.28
2ia0B02 78.14 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 5 77 3.01 3.87
1x7vC00 77.97 Pseudomonas aeruginosaPutative uncharacterized protein 3.30.70.900 97 9 84 3.80 4.50
1mwqA00 77.94 Hypothetical proteinHaemophilus influenzaeUncharacterized protein HI_0828 3.30.70.1060 98 7 79 3.02 3.79
1uw4A00 77.73 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 5 88 3.67 4.13
1x5oA01 77.72 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 8 90 4.01 4.42
1lfwA03 77.55 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 5 75 3.61 4.81
1lfwA02 77.54 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 5 73 3.01 4.09
3bm7A00 77.53 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 101 8 80 3.86 4.81
1pytA00 77.53 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 7 73 3.67 5.00
2bbeA00 77.51 Shewanella oneidensisPutative uncharacterized protein 3.30.70.900 92 7 85 4.14 4.82
1in0A01 77.42 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 10 82 3.74 4.55
2fiuA00 77.31 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.30.70.900 93 7 80 3.78 4.69
2x3dF01 77.30 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 3 92 3.44 3.70
1cg2A02 77.26 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 7 72 3.38 4.65
2bopA00 77.15 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 7 84 3.90 4.60
3c19A01 76.88 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 5 82 3.68 4.45
1d8zA00 76.81 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 8 91 4.26 4.68
1cvjA01 76.63 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 3 90 4.16 4.60
2vqeJ00 76.58 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 7 73 3.04 4.14
1jmtA00 76.58 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 3 79 3.89 4.89
1l3kA02 76.50 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 7 91 4.38 4.78
1wj9A01 76.45 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 2 79 3.72 4.69
1m1hA01 76.25 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 8 76 3.79 4.99
2nuhA00 76.03 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 8 74 3.58 4.84
1nzaA00 75.96 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 8 73 3.57 4.84
3ct9A02 75.70 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.30.70.360 104 7 72 2.94 4.08
2vooA02 75.56 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 9 88 4.42 4.98
2od6A00 75.55 3.30.70.900 104 8 79 3.88 4.86
1nu4A00 75.14 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 4 82 4.08 4.95
1x5uA01 75.02 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 8 89 4.27 4.78
2hzcA00 74.94 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 9 82 3.77 4.56
1t94B02 74.90 DNA polymerase kappaDNA polymerase kappa subunit [EC:2.7.7.7]Homo sapiensDNA repair 3.30.70.270 119 7 61 3.03 4.94
1vlyA02 74.83 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 8 83 4.02 4.82
1q8kA03 74.71 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 3.30.70.1130 116 2 63 3.10 4.86
1kohA01 74.46 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 3 73 3.61 4.93
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Displaying entries 1 to 70 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1u8sA02
THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISNQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSLN
FIKN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1u8sA02
THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTA
LDVQGSLNFIKNSQEGGSHHHHHH
BLAST against CATH

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Domain History Events (4)

Classification merge by cuff on 19 Jan 2007 15:26

Identical domains from same chain. 1u8sA02 (3.30.70.1160) should be merged with the superfamily 3.30.70.260.

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 23:58

Cut based on decision in database "DomChop" on "cathdb"