CATH Domain: 1u8sA01 XML data for domain: 1u8sA01

Molscript image for 1u8sA01
1u8sA01
PDB coordinates for domain 1u8sA01

PDB 1u8s, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.13
3.30.70.260.13.1
3.30.70.260.13.1.1
3.30.70.260.13.1.1.1
3.30.70.260.13.1.1.1.1

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Segment boundaries for domain 1u8sA01

Chopping figure for domain 1u8sA01
DomainStart PDB ResidueStop PDB Residue
1u8sA01 2 87
1u8sA02 89 180

Structural Neighbourhood (73 entries)

There are 73 matching structural neighberhood comparisons for CATH ID 3.30.70.260.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 73 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u0sA00 85.85 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 6 86 1.94 2.25
2nzcA00 85.55 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 12 88 2.52 2.85
2qmxA03 84.76 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 9 90 2.74 3.04
1q5yD00 84.35 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 5 90 2.61 2.88
2iboA00 83.23 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 8 83 2.57 3.06
1vr6A01 82.27 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 13 87 4.04 4.63
1s99A02 81.64 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 9 88 3.43 3.88
2epiB00 81.20 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 3 80 2.48 3.09
1vk8A00 81.11 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 9 80 3.28 4.09
1rk8A00 81.11 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 8 94 4.29 4.55
2pehA01 80.75 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 3 89 4.21 4.70
2qfjA02 80.66 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 5 91 4.12 4.48
2hiyB01 80.57 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 9 85 3.75 4.41
1s99A01 80.56 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 6 82 2.96 3.59
2do0A01 80.55 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 5 86 3.72 4.32
2gx8C02 80.49 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 10 78 3.73 4.76
2x1fA00 80.35 Protein heterodimerization activityMRNA 3'-end-processing protein RNA15MRNA polyadenylationSaccharomyces cerevisiaeMRNA cleavage 3.30.70.330 94 6 85 3.67 4.31
2v8hA02 80.29 Beta-alanine synthaseLachancea kluyveri 3.30.70.360 116 5 72 3.17 4.38
1h2vZ00 80.25 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 8 90 4.27 4.73
1nu4A00 80.07 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 6 85 3.95 4.61
1x5oA01 79.96 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 8 88 4.12 4.66
2x3dF01 79.86 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 8 90 3.15 3.47
1cg2A02 79.61 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 11 71 2.69 3.75
1u7lA01 79.60 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 5 82 3.14 3.81
1oiaA00 79.56 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 6 91 4.37 4.80
1mw7A03 79.41 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 4 82 3.62 4.38
1l3kA01 79.40 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 9 91 4.18 4.55
1uw4A00 79.38 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 4 87 3.62 4.12
1in0A01 79.37 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 8 80 3.54 4.41
1yqhB00 79.23 IG hypothetical 16092Bacillus cereus ATCC 14579 3.30.70.930 98 12 76 3.06 4.00
3ifeA02 79.22 Bacillus anthracisPeptidase TTripeptide aminopeptidase [EC:3.4.11.4] 3.30.70.360 109 6 73 2.84 3.87
1ufwA00 79.16 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 77 3.46 4.44
1gmuA01 79.16 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 5 72 2.96 4.11
1konA03 79.12 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 9 79 3.09 3.91
3feyB00 79.10 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 6 81 3.39 4.16
1qm9A02 79.00 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 6 87 4.09 4.67
1i1gA02 78.61 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 1 84 3.96 4.67
1cvjG02 78.46 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 6 89 4.10 4.57
1lxjA00 78.28 CytoplasmNucleusSaccharomyces cerevisiaeUPF0045 protein ECM15Fungal-type cell wall organization 3.30.70.930 101 6 75 3.36 4.47
1no8A00 78.23 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 3 81 3.50 4.30
1lfpA03 78.23 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 12 81 3.97 4.88
1wj9A02 78.21 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1210 101 9 79 3.82 4.82
1kn6A00 78.15 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 6 77 3.56 4.57
1cvjA01 77.98 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 7 84 3.53 4.16
3c6kA01 77.88 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.30.160.110 94 11 64 3.24 4.99
1x5uA01 77.86 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 6 86 4.24 4.93
2jwnA01 77.63 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 5 77 3.62 4.70
2ia0B02 77.63 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 5 79 3.29 4.12
2rhsD06 77.57 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 3 82 3.55 4.28
1rwuA00 77.48 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 9 77 3.33 4.32
3cedA00 77.44 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 8 75 3.28 4.36
3dnjB00 77.43 ATP-dependent Clp protease adaptor protein ClpSCaulobacter vibrioidesATP-dependent Clp protease adapter protein clpS 3.30.1390.10 75 6 79 3.79 4.79
1mwqA00 77.36 Hypothetical proteinHaemophilus influenzaeUncharacterized protein HI_0828 3.30.70.1060 98 6 81 3.08 3.77
1nzaA00 77.31 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 6 76 3.49 4.55
1b7yB06 77.26 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 1 77 3.43 4.40
1x7vC00 77.24 Pseudomonas aeruginosaPutative uncharacterized protein 3.30.70.900 97 10 85 4.11 4.80
1vgyA02 77.22 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 8 71 3.02 4.25
1jqgA01 77.13 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 4 82 3.55 4.31
2fb0A00 77.05 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 10 85 3.96 4.62
1harA02 76.96 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 7 75 3.14 4.15
1sjqA00 76.95 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 9 94 4.68 4.96
2u1aA00 76.79 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 4 88 4.34 4.90
1lfwA03 76.73 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 12 75 3.70 4.93
1yx2A02 76.57 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 8 69 2.90 4.16
2vqeJ00 76.02 RibosomeThermus thermophilus HB8Small subunit ribosomal protein S1030S ribosomal protein S10 3.30.70.600 98 12 74 3.05 4.09
1l3kA02 75.74 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 7 83 3.90 4.66
2pn6A02 75.63 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 5 77 3.72 4.80
2errA01 75.55 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 9 96 4.51 4.67
2od4B01 75.34 3.30.70.900 81 6 80 3.85 4.80
1dloB02 75.31 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 93 5 79 3.93 4.94
3ct9A02 75.27 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.30.70.360 104 5 69 3.46 5.00
1lfwA02 75.18 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 4 69 3.46 4.96
1fxlA01 75.09 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 8 74 3.72 5.00
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Displaying entries 1 to 73 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1u8sA01
SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKR
TSPHDH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1u8sA01
MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMK
RTSPHDH
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:58

Cut based on decision in database "DomChop" on "cathdb"