CATH Domain: 1u6eA02

1u6eA02

PDB 1u6e, Chain A, Domain 2

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.47	Peroxisomal Thiolase; Chain A, domain 1
3.40.47.10		Gene3D
3.40.47.10.14
3.40.47.10.14.1
3.40.47.10.14.1.1
3.40.47.10.14.1.1.1
3.40.47.10.14.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1u6eA02

Domain	Start PDB Residue	Stop PDB Residue
1u6eA01	-10	172
1u6eA02	173	317

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.47.10.14.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1tedA02	82.68	Chalcone/stilbene synthase family proteinMycobacterium tuberculosis	3.40.47.10	149	11	92	2.81	3.03
	1u0mA02	81.79	Putative polyketide synthaseStreptomyces coelicolor	3.40.47.10	146	16	92	2.82	3.05

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Domain ATOM Sequence

>pdb|1u6eA02
GIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANS
RINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRM

BLAST against CATH

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Domain COMBS Sequence

>pdb|1u6eA02
GIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQANS
RINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRM

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 17 Oct 2008 15:41

Assigning to "3.40.47.10" based on similarity with "1hzpA02"

Flow stage update by auto on 17 Oct 2008 15:40

No in_process hits for Domain "1u6eA02" ready to be processed

Update comment by auto on 17 Oct 2008 15:36

Domain "1u6eA02" hits Domain "1m1mB02" (100% over 98.0392156862745%) which is currently in process

Update comment by auto on 17 Oct 2008 15:30

Domain "1u6eA02" hits Domain "1m1mA02" (100% over 97.4025974025974%) which is currently in process