CATH Domain: 1u57A00 XML data for domain: 1u57A00

Molscript image for 1u57A00
1u57A00
PDB coordinates for domain 1u57A00

PDB 1u57, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.760 Single helix bin Gene3D
1.20.5.760.1
1.20.5.760.1.1
1.20.5.760.1.1.1
1.20.5.760.1.1.1.1
1.20.5.760.1.1.1.1.1

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Segment boundaries for domain 1u57A00

Chopping figure for domain 1u57A00
DomainStart PDB ResidueStop PDB Residue
1u57A00 1 48

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.20.5.760.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ezjA02 84.88 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 2 86 2.49 2.88
3e7kA00 83.16 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 10 81 2.19 2.69
3gwoA00 82.40 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 58 75 2.96 3.92
2k1aA00 82.39 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 0 81 2.20 2.71
1ybkA00 80.98 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 4 65 2.53 3.87
2b9bA04 80.46 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 12 70 2.24 3.16
2dw3A01 79.18 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 6 81 3.38 4.13
2w83C00 79.06 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 2 67 2.28 3.39
1xrdA01 78.21 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 4 85 3.70 4.33
1t6aA01 75.13 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 6 54 1.77 3.27
1favA00 73.05 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 6 52 2.53 4.81
1d7mA00 70.28 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 4 44 2.14 4.80
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1u57A00
LEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1u57A00
LEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIV
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 23:57

Cut based on decision in database "DomChop" on "cathdb"