CATH Domain: 1tzyF00 XML data for domain: 1tzyF00

Molscript image for 1tzyF00
1tzyF00
PDB coordinates for domain 1tzyF00

PDB 1tzy, Chain F, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.3
1.10.20.10.3.1
1.10.20.10.3.1.1
1.10.20.10.3.1.1.1
1.10.20.10.3.1.1.1.1

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Segment boundaries for domain 1tzyF00

Chopping figure for domain 1tzyF00
DomainStart PDB ResidueStop PDB Residue
1tzyF00 33 125

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 1.10.20.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kx5D00 91.34 Histone H2BXenopus laevisHistone H2B 1.1 1.10.20.10 122 95 76 1.35 1.77
1tafB00 85.80 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 15 69 1.68 2.40
1h3oB00 85.79 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 15 76 1.68 2.20
1tafA00 85.25 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 14 72 2.00 2.78
1bh9B00 84.81 Protein N-terminus bindingThyroid hormone receptor bindingTranscription coactivator activityBasal transcription factorsPositive regulation by host of viral transcription 1.10.20.10 89 11 80 2.67 3.31
2hueB00 84.31 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 16 76 1.83 2.40
1eqzH00 84.26 Systemic lupus erythematosusGallus gallusHistone H4Histone H4 1.10.20.10 95 9 81 2.49 3.07
1n1jB00 83.97 Nuclear transcription factor Y subunit gammaSequence-specific DNA binding transcription factor activityRegulation of transcription from RNA polymerase II promoterHomo sapiensRNA polymerase II transcription factor activity 1.10.20.10 78 15 83 2.61 3.11
1b67A00 83.57 Methanothermus fervidusDNA-binding protein HMf-1 1.10.20.10 68 23 73 1.60 2.19
2hueC00 83.56 Systemic lupus erythematosusXenopus laevisHistone H4Histone H4 1.10.20.10 82 12 81 3.91 4.78
1kx5B00 83.12 Systemic lupus erythematosusXenopus laevisHistone H4Histone H4 1.10.20.10 102 9 75 2.49 3.30
1jfiB00 81.58 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 13 65 1.81 2.75
1jfiA00 81.42 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 9 66 2.01 3.02
1kx5A00 78.31 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 13 54 1.99 3.68
1bh9A00 76.00 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 11 48 1.74 3.60
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tzyF00
RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS
EGTKAVTKYTSSK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tzyF00
RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS
EGTKAVTKYTSSK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"