CATH Domain: 1tzyE00 XML data for domain: 1tzyE00

Molscript image for 1tzyE00
1tzyE00
PDB coordinates for domain 1tzyE00

PDB 1tzy, Chain E, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.5
1.10.20.10.5.1
1.10.20.10.5.1.1
1.10.20.10.5.1.1.1
1.10.20.10.5.1.1.1.1

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Segment boundaries for domain 1tzyE00

Chopping figure for domain 1tzyE00
DomainStart PDB ResidueStop PDB Residue
1tzyE00 14 117

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.10.20.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n1jB00 82.26 Nuclear transcription factor Y subunit gammaSequence-specific DNA binding transcription factor activityRegulation of transcription from RNA polymerase II promoterHomo sapiensRNA polymerase II transcription factor activity 1.10.20.10 78 19 75 2.55 3.40
2hueB00 82.25 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 21 68 2.22 3.25
1b67A00 82.24 Methanothermus fervidusDNA-binding protein HMf-1 1.10.20.10 68 26 65 1.93 2.95
1tafB00 80.77 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 10 65 2.57 3.93
1tafA00 80.34 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 14 61 2.05 3.33
1h3oB00 78.94 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 11 64 3.09 4.80
1jfiA00 78.41 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 22 60 2.45 4.04
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tzyE00
AKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL
NKLLGKVTIAQGGVLPNIQAVLLP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tzyE00
MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII
PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKAK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"