CATH Domain: 1tzyC00 XML data for domain: 1tzyC00

Molscript image for 1tzyC00
1tzyC00
PDB coordinates for domain 1tzyC00

PDB 1tzy, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.1
1.10.20.10.1.1
1.10.20.10.1.1.1
1.10.20.10.1.1.1.1
1.10.20.10.1.1.1.1.1

[top]
Segment boundaries for domain 1tzyC00

Chopping figure for domain 1tzyC00
DomainStart PDB ResidueStop PDB Residue
1tzyC00 41 135

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 1.10.20.10.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kx5A00 90.29 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 98 70 0.40 0.57
2hueB00 90.12 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 97 78 0.93 1.18
1tzyF00 85.73 Histone H2BGallus gallusHistone H2B 1/2/3/4/6Protein binding 1.10.20.10 93 13 76 1.78 2.32
1n1jA00 85.59 Sequence-specific DNA binding transcription factor activityRepressing transcription factor bindingHomo sapiensNuclear transcription factor Y subunit betaCCAAT-binding factor complex 1.10.20.10 87 14 75 1.62 2.14
1bh9B00 85.51 Protein N-terminus bindingThyroid hormone receptor bindingTranscription coactivator activityBasal transcription factorsPositive regulation by host of viral transcription 1.10.20.10 89 10 89 3.39 3.79
1b67A00 85.00 Methanothermus fervidusDNA-binding protein HMf-1 1.10.20.10 68 26 71 1.72 2.40
1h3oB00 84.54 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 12 74 1.66 2.22
1tafA00 84.17 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 20 70 1.51 2.14
1tafB00 83.67 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 18 72 2.50 3.44
1n1jB00 83.26 Nuclear transcription factor Y subunit gammaSequence-specific DNA binding transcription factor activityRegulation of transcription from RNA polymerase II promoterHomo sapiensRNA polymerase II transcription factor activity 1.10.20.10 78 12 73 2.28 3.09
1jfiA00 81.26 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 11 66 2.31 3.48
1h3oA00 77.20 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 20 50 1.63 3.23
1jfiB00 76.95 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 10 54 1.89 3.50
1bh9A00 75.46 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 13 47 2.13 4.50
[1]
Displaying entries 1 to 14 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1tzyC00
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM
PKDIQLARRIRGERA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1tzyC00
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM
PKDIQLARRIRGERA
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"