CATH Domain: 1tvkB03 XML data for domain: 1tvkB03

Molscript image for 1tvkB03
1tvkB03
PDB coordinates for domain 1tvkB03

PDB 1tvk, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.600 Helix hairpin bin Gene3D
1.10.287.600.2
1.10.287.600.2.1
1.10.287.600.2.1.1
1.10.287.600.2.1.1.1
1.10.287.600.2.1.1.1.1

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Segment boundaries for domain 1tvkB03

Chopping figure for domain 1tvkB03
DomainStart PDB ResidueStop PDB Residue
1tvkB01 2 259
1tvkB02 260 373
1tvkB03 374 427

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 1.10.287.600.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bz1Z00 83.76 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 3 87 3.84 4.41
1nt2B02 83.39 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 5 74 3.02 4.05
2e5yA02 82.98 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 11 83 3.22 3.86
2oyqA04 82.63 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 8 79 2.33 2.93
1b04A03 81.72 Geobacillus stearothermophilusDNA ligase 1.10.287.610 62 0 70 2.71 3.82
1wb7A01 81.70 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 7 79 3.49 4.41
1ta8A01 81.58 DNA ligase (NAD+) [EC:6.5.1.2]DNA replicationNucleotide excision repairBase excision repairDNA ligase 1.10.287.610 64 3 68 2.79 4.06
3csxA00 81.37 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 7 88 4.00 4.52
2be3A02 80.26 Purine metabolismPutative GTP pyrophosphokinase [EC:2.7.6.5]Streptococcus pneumoniaePutative uncharacterized protein 1.10.287.860 55 3 74 2.80 3.76
1sf9A01 80.12 Bacillus subtilisUncharacterized protein yfhH 1.10.287.880 64 3 54 1.41 2.58
2fb5A01 79.84 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 11 68 2.60 3.82
1skvA00 79.14 Protein D-63Sulfolobus virus 1 1.10.287.660 62 1 80 3.70 4.59
2nn4A00 78.51 Bacillus subtilisUncharacterized protein yqgQ 1.10.287.760 62 3 59 2.52 4.22
2a79B02 71.87 Rattus norvegicusPotassium voltage-gated channel, Shaker-related subfamily A, member 2Potassium voltage-gated channel subfamily A member 2Voltage-gated potassium channel complexProtein binding 1.10.287.930 61 3 39 1.31 3.33
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tvkB03
IQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tvkB03
IQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:32

Assigning to "1.10.287.600" based on similarity with "1tubB03" (NWSI: 100, NWO: 100, SPS: 90.38, SPO: 100, RMSD: 1.59)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1tvkB03"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1tvkB03"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1tvkB03"

Insertion by auto on 05 Mar 2006 23:55

Cut based on decision in database "DomChop" on "cathdb"