CATH Domain: 1trbA01 XML data for domain: 1trbA01

Molscript image for 1trbA01
1trbA01
PDB coordinates for domain 1trbA01

PDB 1trb, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.20
3.50.50.60.20.1
3.50.50.60.20.1.1
3.50.50.60.20.1.1.1
3.50.50.60.20.1.1.1.1

Segment boundaries for domain 1trbA01

Chopping figure for domain 1trbA01
DomainStart PDB ResidueStop PDB Residue
1trbA01 1 116
1trbA01 245 315
1trbA02 117 244

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.50.50.60.20.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3fbsB01 88.75 Agrobacterium tumefaciens str. C58Oxidoreductase 3.50.50.60 188 18 93 1.67 1.79
1xhcA01 84.39 Pyrococcus furiosusNADH oxidase /nitrite reductase 3.50.50.60 180 18 89 4.35 4.87
1nhpA01 84.36 NADH peroxidaseNADH peroxidase [EC:1.11.1.1]Enterococcus faecalis 3.50.50.60 167 22 74 2.86 3.85
1sezA01 83.25 Nicotiana tabacumProtoporphyrinogen oxidase, mitochondrial 3.50.50.60 177 14 78 3.43 4.39
1fcdA01 83.19 Allochromatium vinosumSulfide dehydrogenase [flavocytochrome c] flavoprotein chain 3.50.50.60 188 16 91 4.47 4.89
1xdiA01 83.01 Citrate cycle (TCA cycle)Valine, leucine and isoleucine degradationPyruvate metabolismGlycine, serine and threonine metabolismMetabolic pathways 3.50.50.60 218 23 80 3.89 4.82
2iidA02 82.57 Calloselasma rhodostomaL-amino-acid oxidase 3.50.50.60 148 16 73 2.49 3.40
2nvkX01 81.49 Protein homodimerization activityThioredoxin reductase 1, mitochondrialThioredoxin-disulfide reductase activityDetermination of adult lifespanDrosophila melanogaster 3.50.50.60 230 14 74 3.52 4.73
3kkjA01 81.40 Pseudomonas syringae pv. tomatoAmine oxidase, flavin-containing protein 3.50.50.60 150 19 78 3.20 4.07
3cgvA01 81.11 3.50.50.60 219 17 73 2.79 3.82
2gqfA01 80.40 Haemophilus influenzaeUncharacterized protein HI_0933 3.50.50.60 244 17 72 2.71 3.76
1rsgA01 79.87 CytoplasmPolyamine oxidase FMS1Polyamine catabolic processSaccharomyces cerevisiaePrimary amine oxidase activity 3.50.50.60 242 14 69 2.92 4.18
2i0zA01 79.17 NAD(FAD)-utilizing dehydrogenasesBacillus cereus ATCC 14579 3.50.50.60 260 15 70 2.73 3.90
1k0iA01 78.22 Pseudomonas aeruginosaP-hydroxybenzoate hydroxylaseP-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]2,4-Dichlorobenzoate degradationBenzoate degradation via hydroxylation 3.50.50.60 240 11 70 3.34 4.77
1pn0A01 77.67 Trichosporon cutaneumPhenol 2-monooxygenase 3.50.50.60 253 14 64 3.06 4.75
1y0pA02 76.49 Shewanella frigidimarinaFumarate reductase flavoprotein subunit 3.50.50.60 320 18 55 2.42 4.35
2h88A01 75.93 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialGallus gallus 3.50.50.60 326 16 55 2.67 4.84
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|1trbA01
GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII
FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM
DHIYRQAITSAGTGCMAALDAERYLDG    

Domain COMBS Sequence

>pdb|1trbA01
GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII
FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM
DHIYRQAITSAGTGCMAALDAERYLDG    

Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1trb001" to "1trbA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:46

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"