CATH Domain: 1topA02 XML data for domain: 1topA02

Molscript image for 1topA02
1topA02
PDB coordinates for domain 1topA02

PDB 1top, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.16
1.10.238.10.16.1
1.10.238.10.16.1.1
1.10.238.10.16.1.1.1
1.10.238.10.16.1.1.1.1

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Segment boundaries for domain 1topA02

Chopping figure for domain 1topA02
DomainStart PDB ResidueStop PDB Residue
1topA01 1 75
1topA02 76 162

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 1.10.238.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2f3yA02 90.13 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 35 78 1.19 1.52
1ggzA01 89.56 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 34 82 1.91 2.31
1dtlA02 88.96 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 66 72 1.26 1.74
1qtxA02 88.85 1.10.238.10 68 36 78 1.61 2.06
1g4yR01 88.78 Calcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathwayOocyte meiosisGnRH signaling pathway 1.10.238.10 80 32 87 2.53 2.90
1g33A00 87.48 Rattus norvegicusParvalbumin alpha 1.10.238.10 73 31 80 2.59 3.22
1fi5A00 86.22 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 81 62 93 4.32 4.64
1wdcB01 85.72 Myosin regulatory light chain, striated adductor muscleArgopecten irradians 1.10.238.10 70 20 79 2.23 2.81
1qx2A00 85.32 Protein S100-GBos taurus 1.10.238.10 75 29 80 3.92 4.87
1a4pA00 84.49 Protein S100-A10Homo sapiens 1.10.238.10 92 17 80 3.24 4.03
1qasA01 84.09 Calcium ion bindingPhosphatidylinositol signaling systemCalcium signaling pathwayRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 88 11 80 3.53 4.38
1tizA00 83.99 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 30 75 2.45 3.23
1jfjA01 82.89 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 25 72 2.00 2.76
1eg3A04 81.66 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 17 75 2.93 3.86
2os8B01 79.37 Myosin regulatory light chainPlacopecten magellanicus 1.10.238.10 65 27 73 2.36 3.21
1jfjA02 78.57 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 71 22 81 3.09 3.79
1uurA03 78.41 Protein homodimerization activityNucleusSignal transducer and activator of transcription APositive regulation of transcriptionCytosol 1.10.238.10 88 8 78 3.92 5.00
1k90E01 77.88 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 35 80 3.62 4.50
1djxB01 77.50 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 11 59 2.75 4.60
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1topA02
EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL
KMMEGVQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1topA02
EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL
KMMEGVQ
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1top002" to "1topA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:46

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"