CATH Domain: 1tn3A00 XML data for domain: 1tn3A00

Molscript image for 1tn3A00
1tn3A00
PDB coordinates for domain 1tn3A00

PDB 1tn3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.15
3.10.100.10.15.1
3.10.100.10.15.1.1
3.10.100.10.15.1.1.1
3.10.100.10.15.1.1.1.1

Segment boundaries for domain 1tn3A00

Chopping figure for domain 1tn3A00
DomainStart PDB ResidueStop PDB Residue
1tn3A00 45 181

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.10.100.10.15.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kza100 90.29 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 33 84 1.19 1.41
1jznA00 89.72 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 22 94 2.25 2.37
1h8uB00 88.14 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 18 83 1.94 2.32
1rtm100 87.91 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 25 81 2.34 2.88
1byfA00 86.81 LectinPolyandrocarpa misakiensis 3.10.100.10 123 15 86 1.91 2.20
1hq8A00 86.31 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 21 85 2.56 3.01
3g8kA00 85.90 Mus musculusPlasma membraneLectin-related NK cell receptor LY49L1 3.10.100.10 127 14 88 2.42 2.75
1rjhA00 85.31 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 92 83 2.19 2.62
3bdwA00 84.50 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 21 85 2.87 3.34
1sl6A00 84.20 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 21 73 2.55 3.45
1eslA00 84.09 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 21 73 1.84 2.51
3fd4A00 81.07 Glycoprotein 42Human herpesvirus 4 (strain B95-8) 3.10.100.10 140 14 81 2.57 3.16
1f00I03 77.10 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 11 65 3.27 4.96
1cwvA05 76.61 InvasinYersinia pseudotuberculosis 3.10.100.10 100 11 65 2.87 4.40
3g4nA01 74.54 AerolysinAeromonas hydrophila 3.10.40.10 89 11 56 2.63 4.67
Displaying entries 1 to 15 (page 1 of 1)


Domain ATOM Sequence

>pdb|1tn3A00
ALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWV
DMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV    

Domain COMBS Sequence

>pdb|1tn3A00
ALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWV
DMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV    

Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1tn3000" to "1tn3A00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"