CATH Domain: 1tn3A00 XML data for domain: 1tn3A00

Molscript image for 1tn3A00
1tn3A00
PDB coordinates for domain 1tn3A00

PDB 1tn3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.15
3.10.100.10.15.1
3.10.100.10.15.1.1
3.10.100.10.15.1.1.1
3.10.100.10.15.1.1.1.1

[top]
Segment boundaries for domain 1tn3A00

Chopping figure for domain 1tn3A00
DomainStart PDB ResidueStop PDB Residue
1tn3A00 45 181

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.10.100.10.15.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kza100 90.29 3.10.100.10 115 33 84 1.19 1.41
1jznA00 89.72 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 22 94 2.25 2.37
1h8uB00 88.14 Bone marrow proteoglycan precursorHomo sapiensSugar bindingExtracellular region 3.10.100.10 116 18 83 1.94 2.32
1rtm100 87.91 3.10.100.10 149 25 81 2.34 2.88
1byfA00 86.81 LectinPolyandrocarpa misakiensis 3.10.100.10 123 15 86 1.91 2.20
1qo3C00 86.64 Mus musculusNatural killer cell receptor Ly49A 3.10.100.10 128 15 88 2.56 2.90
1hq8A00 86.31 Protein bindingSugar bindingPositive regulation of interferon-gamma productionPositive regulation of nitric oxide biosynthetic processEukaryotic plasma membrane / membrane attached 3.10.100.10 123 21 85 2.56 3.01
1rjhA00 85.31 Tetranectin precursorOsteogenesisSkeletal developmentExtracellular matrix componentHomo sapiens 3.10.100.10 118 92 83 2.19 2.62
3bdwA00 84.50 Eukaryotic plasma membrane / membrane attachedKiller cell lectin-like receptor subfamily D, member 1Plasma membraneNatural killer cell mediated cytotoxicityProtein binding 3.10.100.10 123 21 85 2.87 3.34
1sl6A00 84.20 Virus-host interactionIntegral to plasma membraneVirion bindingIntracellular virion transportCell-cell recognition 3.10.100.10 168 21 73 2.55 3.45
1eslA00 84.09 E-selectin precursorPlasma membraneHomo sapiensInflammatory response 3.10.100.10 157 21 73 1.84 2.51
1kg0C00 82.02 3.10.100.10 136 14 83 2.82 3.36
1f00I03 77.10 3.10.100.10 98 11 65 3.27 4.96
1cwvA05 76.61 InvasinYersinia pseudotuberculosis 3.10.100.10 100 11 65 2.87 4.40
3c0nA01 74.47 Aerolysin precursorAeromonas hydrophila 3.10.40.10 89 11 56 2.63 4.67
[1]
Displaying entries 1 to 15 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1tn3A00
ALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWV
DMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1tn3A00
ALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWV
DMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
BLAST against CATH

[top]
Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1tn3000" to "1tn3A00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"