CATH Domain: 1tkeA01 XML data for domain: 1tkeA01

Molscript image for 1tkeA01
1tkeA01
PDB coordinates for domain 1tkeA01

PDB 1tke, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.17
3.10.20.30.17.1
3.10.20.30.17.1.1
3.10.20.30.17.1.1.1
3.10.20.30.17.1.1.1.1

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Segment boundaries for domain 1tkeA01

Chopping figure for domain 1tkeA01
DomainStart PDB ResidueStop PDB Residue
1tkeA01 1 64
1tkeA02 65 129
1tkeA02 188 224
1tkeA03 130 187

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 3.10.20.30.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1zud400 83.45 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 10 90 2.65 2.92
1tygB00 83.21 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 9 92 2.74 2.97
1ryjA00 83.14 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 12 88 3.00 3.39
3cwiA00 82.95 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 9 91 3.24 3.56
2kd0A01 81.41 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 10 84 2.74 3.24
1wywB00 79.02 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 10 75 3.47 4.57
1z2mA02 78.44 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 4 80 2.87 3.56
1wxmA01 78.40 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 10 74 2.99 4.01
1rwsA00 78.38 Pyrococcus furiosusPutative uncharacterized protein 3.10.20.30 68 14 86 3.56 4.10
1y8rC00 78.04 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 10 71 3.47 4.86
1c1yB00 77.87 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 10 77 3.76 4.83
2he7A01 77.81 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 6 76 2.78 3.65
1yqbA01 77.81 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 9 83 3.19 3.84
2fazA00 77.45 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 10 75 3.36 4.46
1wm3A00 77.26 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 9 81 4.04 4.93
1oqyA01 77.07 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 4 74 3.16 4.23
1h8cA00 76.88 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 7 76 3.23 4.20
1m94A00 76.76 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 10 82 3.85 4.68
2gbjB00 76.43 3.10.20.90 84 7 73 3.00 4.06
1h4rA01 76.43 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 1 78 3.55 4.54
2zeqA00 75.91 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 9 78 3.61 4.62
1lfdA00 75.88 Rattus norvegicusRal guanine nucleotide dissociation stimulatorSmall GTPase mediated signal transduction 3.10.20.90 87 6 66 3.33 5.00
1wh3A01 75.77 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 10 78 3.57 4.53
2bwfA00 75.20 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 9 75 3.75 4.98
2kfjA00 74.75 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipInvasive growth in response to glucose limitationCell division control protein 24 3.10.20.240 86 3 69 3.44 4.93
1ip9A00 73.77 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 9 72 3.59 4.92
2r2oA00 72.74 Semaphorin receptor bindingPlexin BSemaphorin receptor activityHomo sapiensPlexin-B1 3.10.20.90 98 3 62 2.99 4.80
1j8cA00 72.59 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 9 59 2.83 4.78
1wxsA00 71.16 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 9 72 3.61 4.96
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tkeA01
MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tkeA01
MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKD
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Nov 2007 14:28

Assigning to "3.10.20.30" based on similarity with "1qf6A01"

Flow stage update by auto on 23 Nov 2007 14:04

No in_process hits for Domain "1tkeA01" ready to be processed

Flow stage update by auto on 23 Nov 2007 14:02

NW result present for Domain "1tkeA01"

Flow stage update by auto on 23 Nov 2007 14:02

All required files are present for Domain "1tkeA01"

Flow stage update by auto on 13 Nov 2007 00:11

Beginning processing for Domain "1tkeA01"

Insertion by auto on 12 Nov 2007 19:59

Final ChopClose added based on similarity with "1tjeA"