CATH Domain: 1thxA00 XML data for domain: 1thxA00

Molscript image for 1thxA00
1thxA00
PDB coordinates for domain 1thxA00

PDB 1thx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.27
3.40.30.10.27.1
3.40.30.10.27.1.1
3.40.30.10.27.1.1.1
3.40.30.10.27.1.1.1.1

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Segment boundaries for domain 1thxA00

Chopping figure for domain 1thxA00
DomainStart PDB ResidueStop PDB Residue
1thxA00 1 108

Structural Neighbourhood (33 entries)

There are 33 matching structural neighberhood comparisons for CATH ID 3.40.30.10.27.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 33 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w4vA00 91.08 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 26 98 1.39 1.42
1gh2A00 90.97 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 20 97 1.31 1.35
2e0qA00 90.51 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 26 95 1.35 1.42
3gnjA00 89.63 Desulfitobacterium hafniense DCB-2Thioredoxin domain protein 3.40.30.10 107 16 97 2.68 2.76
1v98A00 89.42 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 33 83 1.80 2.16
2dizA00 88.27 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 23 90 2.24 2.47
2b5eA01 86.72 Protein disulfide isomerase activityProtein disulfide oxidoreductase activityProtein bindingProtein foldingEndoplasmic reticulum lumen 3.40.30.10 119 21 89 2.31 2.59
2f51A00 85.96 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 24 89 2.12 2.36
2in3A01 84.08 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 32 69 1.53 2.20
1a8yA02 83.86 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 102 9 89 2.63 2.93
1a8yA01 83.70 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 124 15 85 2.75 3.22
2av4A00 83.61 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 11 80 3.61 4.51
2qsiA01 83.48 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 3.40.30.10 82 13 74 2.03 2.74
1mekA00 83.45 Cell surfaceER-Golgi intermediate compartmentProtein disulfide isomerase activityProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 120 18 89 2.66 2.98
3gixA00 83.33 Thioredoxin-like protein 4BHomo sapiens 3.40.30.10 133 6 76 1.93 2.52
2b5eA04 83.03 Endoplasmic reticulum lumenProtein disulfide oxidoreductase activityProtein disulfide isomerase activityProlyl 4-hydroxylase, beta polypeptide [EC:5.3.4.1]Saccharomyces cerevisiae 3.40.30.10 140 25 75 2.44 3.22
2trcP01 82.83 PhosducinRattus norvegicus 3.40.30.10 131 15 80 2.97 3.71
1sjiA03 82.28 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 12 85 2.71 3.17
1bjxA00 81.62 Cell surfaceProtein disulfide isomerase activityER-Golgi intermediate compartmentProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 110 13 89 2.86 3.21
2kucA00 81.38 Bacteroides thetaiotaomicronPutative disulphide-isomerase 3.40.30.10 121 22 85 2.88 3.35
2okaA00 80.72 Pseudomonas aeruginosaSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 84 14 68 2.08 3.04
1ttzA00 80.69 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 17 68 2.75 4.01
2p0gB00 80.26 Vibrio choleraeSelenoprotein W-related proteinSelenoprotein W-related protein 3.40.30.10 79 10 67 2.44 3.61
2fa8B00 79.72 Agrobacterium tumefaciens str. C58Selenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 86 9 67 2.16 3.20
3kp9A02 79.65 VKORC1/thioredoxin domain proteinSynechococcus sp. JA-2-3B'a(2-13) 3.40.30.10 97 16 73 3.30 4.51
1h75A00 79.46 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 10 66 2.42 3.63
3dexH00 79.32 Streptomyces avermitilisSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 83 8 69 2.66 3.83
1g7eA00 78.77 Rattus norvegicusEndoplasmic reticulum lumenEndoplasmic reticulum protein 29Transport vesicleEndoplasmic reticulum resident protein 29 3.40.30.10 122 13 85 4.09 4.80
3f9uA00 77.77 Bacteroides fragilis NCTC 9343Putative exported cytochrome C biogenesis-related protein 3.40.30.10 139 16 74 3.28 4.38
1t1vA00 76.35 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 6 72 3.15 4.36
1iloA00 74.75 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.30.10 77 11 67 2.52 3.73
1fo5A00 72.87 Methanocaldococcus jannaschiiThioredoxin 3.40.30.10 85 11 75 3.35 4.41
1u6tA00 72.21 CytoplasmSH3 domain-binding glutamic acid-rich-like proteinNucleusHomo sapiensSH3/SH2 adaptor activity 3.40.30.10 120 9 64 2.75 4.29
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Displaying entries 1 to 33 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1thxA00
SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL
VKGEQILDSTEGVISKDKLLSFLDTHLN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1thxA00
METAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGV
PALRLVKGEQILDSTEGVISKDKLLSFLDTHLNNN
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1thx000" to "1thxA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:34

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"