CATH Domain: 1tfrA02 XML data for domain: 1tfrA02

Molscript image for 1tfrA02
1tfrA02
PDB coordinates for domain 1tfrA02

PDB 1tfr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.4
1.10.150.20.4.1
1.10.150.20.4.1.1
1.10.150.20.4.1.1.1
1.10.150.20.4.1.1.1.1

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Segment boundaries for domain 1tfrA02

Chopping figure for domain 1tfrA02
DomainStart PDB ResidueStop PDB Residue
1tfrA01 12 183
1tfrA01 260 304
1tfrA02 184 259

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.10.150.20.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xo1A01 80.87 Enterobacteria phage T5Exodeoxyribonuclease 1.10.150.20 80 15 73 2.93 3.97
2ah5A02 77.76 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 1.10.150.240 64 4 69 2.88 4.13
2ztdA02 77.53 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 4 60 2.47 4.08
2hszA02 75.91 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 1.10.150.240 72 4 67 3.20 4.77
1go3F01 75.14 Pyrimidine metabolismPurine metabolismMethanocaldococcus jannaschiiDNA-directed RNA polymerase subunit F [EC:2.7.7.6]Uncharacterized protein MJ0039 1.10.150.80 60 8 67 3.00 4.47
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tfrA02
SAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLID
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tfrA02
SAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLID
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1tfr002" to "1tfrA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 18 Jan 2007 20:34

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 20:34

Rechopping chains just before release v3.1.0 in order to fix missing fragments.