CATH Domain: 1tf6D04 XML data for domain: 1tf6D04

Molscript image for 1tf6D04
1tf6D04
PDB coordinates for domain 1tf6D04

PDB 1tf6, Chain D, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.17
3.30.160.60.17.1
3.30.160.60.17.1.1
3.30.160.60.17.1.1.1
3.30.160.60.17.1.1.1.2

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Segment boundaries for domain 1tf6D04

Chopping figure for domain 1tf6D04
DomainStart PDB ResidueStop PDB Residue
1tf6D01 7 39
1tf6D02 40 68
1tf6D03 69 102
1tf6D04 103 132
1tf6D05 133 161
1tf6D06 162 188

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.30.160.60.17.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A02 92.04 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 31 93 1.02 1.09
1x5wA01 91.81 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 17 90 0.99 1.10
1tf3A01 89.69 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 36 96 1.72 1.78
1bboA02 88.64 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 26 90 2.82 3.12
2adrA01 88.61 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 37 93 2.30 2.46
1pjqA02 83.07 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 3 80 1.87 2.34
1bbgA00 79.12 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 6 62 1.83 2.93
1ncsA00 78.49 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 26 63 2.15 3.37
3bidA01 78.17 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 6 65 1.92 2.94
1llmD02 78.02 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 23 49 1.56 3.18
1kyqA02 77.38 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 6 75 2.54 3.36
1yuiA00 76.70 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 16 51 1.91 3.68
1b69A00 70.42 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 10 43 2.06 4.74
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tf6D04
CVYVCHFENCGKAFKKHNQLKVHQFSHTQQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tf6D04
CVYVCHFENCGKAFKKHNQLKVHQFSHTQQ
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Nov 2007 14:16

Assigning to "3.30.160.60" based on similarity with "2hghA01"

Flow stage update by auto on 23 Nov 2007 14:03

No in_process hits for Domain "1tf6D04" ready to be processed

Flow stage update by auto on 23 Nov 2007 14:02

NW result present for Domain "1tf6D04"

Flow stage update by auto on 23 Nov 2007 14:01

All required files are present for Domain "1tf6D04"

Flow stage update by auto on 13 Nov 2007 00:10

Beginning processing for Domain "1tf6D04"

Insertion by cuff on 24 Sep 2007 14:05

nice chopping