CATH Domain: 1tf3A03 XML data for domain: 1tf3A03

Molscript image for 1tf3A03
1tf3A03
PDB coordinates for domain 1tf3A03

PDB 1tf3, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.15
3.30.160.60.15.1
3.30.160.60.15.1.1
3.30.160.60.15.1.1.1
3.30.160.60.15.1.1.1.3

[top]
Segment boundaries for domain 1tf3A03

Chopping figure for domain 1tf3A03
DomainStart PDB ResidueStop PDB Residue
1tf3A01 1 39
1tf3A02 40 69
1tf3A03 70 101

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.30.160.60.15.1.1.1.3 (SIMAX score < 5)

[1]
Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A04 88.56 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 16 88 1.87 2.12
1tf6A02 85.86 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 31 85 1.83 2.15
1bboA02 85.78 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 32 88 2.32 2.63
1un6D02 85.66 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 22 88 1.87 2.12
1x5wA01 83.48 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 17 82 2.11 2.56
1tf3A01 83.22 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 13 88 2.36 2.67
2adrA01 81.00 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 24 85 3.05 3.58
1pjqA02 79.25 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 5 80 2.57 3.21
1llmD02 78.02 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 26 52 1.51 2.86
1ncsA00 76.90 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 23 70 3.50 4.98
3bidA01 76.81 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 8 69 3.08 4.43
1bbgA00 75.62 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 14 65 2.55 3.92
1kyqA02 73.27 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 0 83 3.92 4.68
[1]
Displaying entries 1 to 13 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1tf3A03
EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1tf3A03
EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"