CATH Domain: 1tf3A02 XML data for domain: 1tf3A02

Molscript image for 1tf3A02
1tf3A02
PDB coordinates for domain 1tf3A02

PDB 1tf3, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.18
3.30.160.60.18.1
3.30.160.60.18.1.1
3.30.160.60.18.1.1.1
3.30.160.60.18.1.1.1.3

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Segment boundaries for domain 1tf3A02

Chopping figure for domain 1tf3A02
DomainStart PDB ResidueStop PDB Residue
1tf3A01 1 39
1tf3A02 40 69
1tf3A03 70 101

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.30.160.60.18.1.1.1.3 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x5wA01 91.47 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 28 93 1.04 1.12
1tf3A01 90.13 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 24 96 1.72 1.78
2adrA01 89.61 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 34 89 1.68 1.87
1bboA02 88.10 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 24 87 1.52 1.75
1pjqA02 82.61 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 3 80 1.68 2.10
3bidA01 77.79 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 10 63 1.90 3.01
1ncsA00 77.33 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 34 61 2.31 3.74
1bbgA00 77.01 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 6 65 2.06 3.17
1kyqA02 76.47 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 0 72 2.54 3.48
1llmD02 75.25 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 24 45 1.39 3.06
3c6mC01 72.39 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.30.160.110 44 0 63 2.87 4.51
2r85A03 71.52 Pyrococcus furiosus5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-]Purine metabolism5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetaseMetabolic pathways 3.30.1490.20 58 10 48 2.22 4.60
1b69A00 69.59 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 10 42 2.01 4.78
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tf3A02
EKPFPCKEEGCEKGFTSLHHLTRHSLTHTG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tf3A02
EKPFPCKEEGCEKGFTSLHHLTRHSLTHTG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"