CATH Domain: 1tf3A01 XML data for domain: 1tf3A01

Molscript image for 1tf3A01
1tf3A01
PDB coordinates for domain 1tf3A01

PDB 1tf3, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.22
3.30.160.60.22.1
3.30.160.60.22.1.1
3.30.160.60.22.1.1.1
3.30.160.60.22.1.1.1.1

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Segment boundaries for domain 1tf3A01

Chopping figure for domain 1tf3A01
DomainStart PDB ResidueStop PDB Residue
1tf3A01 1 39
1tf3A02 40 69
1tf3A03 70 101

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.30.160.60.22.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x5wA01 88.59 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 21 93 1.91 2.05
2adrA01 87.83 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 24 90 1.57 1.74
1kyqA02 82.20 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 3 75 1.76 2.33
1pjqA02 77.01 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 13 82 3.08 3.72
3bidA01 76.79 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 13 65 2.22 3.40
1ncsA00 74.76 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 20 63 2.10 3.29
1yuiA00 74.44 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 20 51 2.35 4.53
1bbgA00 72.17 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 13 65 3.11 4.78
2r85A03 72.07 Pyrococcus furiosus5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-]Purine metabolism5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetaseMetabolic pathways 3.30.1490.20 58 13 51 2.50 4.83
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tf3A01
MKRYICSFADCGAAYNKNWKLQAHLSKHTG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tf3A01
MKRYICSFADCGAAYNKNWKLQAHLSKHTG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"