CATH Domain: 1tdqB00 XML data for domain: 1tdqB00

Molscript image for 1tdqB00
1tdqB00
PDB coordinates for domain 1tdqB00

PDB 1tdq, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.12
3.10.100.10.12.2
3.10.100.10.12.2.1
3.10.100.10.12.2.1.1
3.10.100.10.12.2.1.1.1

[top]
Segment boundaries for domain 1tdqB00

Chopping figure for domain 1tdqB00
DomainStart PDB ResidueStop PDB Residue
1tdqB00 1 126

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.10.100.10.12.2.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jznA00 92.01 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 32 95 1.57 1.64
1tn3A00 88.80 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 135 21 92 2.42 2.63
1kza100 88.33 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 20 82 1.46 1.78
1h8uB00 87.30 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 22 81 2.01 2.47
1rtm100 86.98 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 15 83 2.24 2.69
1g1tA01 86.18 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 119 20 80 1.80 2.23
1sl6A00 85.80 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 26 75 2.20 2.93
1byfA00 85.31 LectinPolyandrocarpa misakiensis 3.10.100.10 123 16 84 2.27 2.69
1hq8A00 84.68 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 22 84 2.20 2.61
3g8kA00 84.22 Mus musculusPlasma membraneLectin-related NK cell receptor LY49L1 3.10.100.10 127 14 87 4.05 4.65
1eslA00 84.01 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 17 73 1.80 2.44
3bdwA00 83.56 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 21 85 2.70 3.15
1rjhA00 81.07 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 21 81 2.80 3.44
3fd4A00 80.70 Glycoprotein 42Human herpesvirus 4 (strain B95-8) 3.10.100.10 140 10 85 3.05 3.59
1cwvA05 75.97 InvasinYersinia pseudotuberculosis 3.10.100.10 100 14 62 2.70 4.34
[1]
Displaying entries 1 to 15 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1tdqB00
EQCEEGWTKFQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFRWSDGHSLQ
FEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCNYQLPFTCKKG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1tdqB00
RADQEQCEEGWTKFQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFRWSDG
HSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCNYQLPFTCKKG
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:53

Cut based on decision in database "DomChop" on "cathdb"