CATH Domain: 1tafB00 XML data for domain: 1tafB00

Molscript image for 1tafB00
1tafB00
PDB coordinates for domain 1tafB00

PDB 1taf, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.14
1.10.20.10.14.1
1.10.20.10.14.1.1
1.10.20.10.14.1.1.1
1.10.20.10.14.1.1.1.1

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Segment boundaries for domain 1tafB00

Chopping figure for domain 1tafB00
DomainStart PDB ResidueStop PDB Residue
1tafB00 1 70

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.20.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h3oB00 90.49 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 15 90 1.66 1.84
1tafA00 89.21 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 17 92 2.13 2.30
1jfiA00 88.53 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 7 89 1.35 1.50
1jfiB00 77.03 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 11 49 1.69 3.41
1kx5A00 76.40 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 18 51 2.48 4.85
1f1eA00 76.09 Methanopyrus kandleriHistone H3/H4 1.10.20.10 147 14 46 1.84 3.92
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1tafB00
MLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1tafB00
MLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"