CATH Domain: 1t4oA00 XML data for domain: 1t4oA00

Molscript image for 1t4oA00
1t4oA00
PDB coordinates for domain 1t4oA00

PDB 1t4o, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.20 Gene3D
3.30.160.20.5
3.30.160.20.5.1
3.30.160.20.5.1.1
3.30.160.20.5.1.1.1
3.30.160.20.5.1.1.1.1

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Segment boundaries for domain 1t4oA00

Chopping figure for domain 1t4oA00
DomainStart PDB ResidueStop PDB Residue
1t4oA00 363 443

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.30.160.20.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x49A01 84.31 TranslationInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingEndoplasmic reticulum unfolded protein responseMus musculus 3.30.160.20 70 12 85 3.07 3.60
1qu6A02 81.77 Eukaryotic translation initiation factor 2alpha kinase activityProtein phosphatase type 2A regulator activityInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingNegative regulation of osteoblast proliferation 3.30.160.20 76 14 92 3.75 4.05
2b7vA00 80.94 Rattus norvegicusNucleolusDouble-stranded RNA-specific editase 1MRNA modificationNucleoplasm 3.30.160.20 71 25 86 3.76 4.35
1stuA00 80.89 Cytoplasmic mRNA processing bodyAsymmetric protein localization involved in cell fate determinationDrosophila melanogasterApical cortexBasal cortex 3.30.160.20 68 22 82 3.96 4.79
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1t4oA00
TDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYA
K
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1t4oA00
MKTDKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF
YAK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:15

Assigning to "3.30.160.20" based on similarity with "1t4oB00" (NWSI: 100, NWO: 94.3181818181818, SPS: 93.71, SPO: 91, RMSD: 0.71)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1t4oA00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1t4oA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1t4oA00"

Insertion by auto on 05 Mar 2006 23:51

Cut based on decision in database "DomChop" on "cathdb"