CATH Domain: 1svcP02 XML data for domain: 1svcP02

Molscript image for 1svcP02
1svcP02
PDB coordinates for domain 1svcP02

PDB 1svc, Chain P, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.56
2.60.40.10.56.1
2.60.40.10.56.1.1
2.60.40.10.56.1.1.8
2.60.40.10.56.1.1.8.1

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Segment boundaries for domain 1svcP02

Chopping figure for domain 1svcP02
DomainStart PDB ResidueStop PDB Residue
1svcP01 43 244
1svcP02 249 353

Structural Neighbourhood (49 entries)

There are 49 matching structural neighberhood comparisons for CATH ID 2.60.40.10.56.1.1.8.1 (SIMAX score < 5)

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Displaying entries 1 to 49 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1imhC02 89.34 Nuclear factor of activated T-cells 5Transcription from RNA polymerase II promoterSequence-specific DNA binding transcription factor activityNucleusExcretion 2.60.40.10 106 24 94 2.28 2.42
1p7hL02 88.22 Nuclear factor of activated T-cells, cytoplasmic 2Sequence-specific DNA binding transcription factor activityTranscription activator activityNucleusHomo sapiens 2.60.40.10 107 19 92 1.78 1.92
3bmvA03 83.05 Cyclomaltodextrin glucanotransferaseThermoanaerobacterium thermosulfurigenes 2.60.40.10 80 18 75 2.10 2.76
3iagC03 81.95 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumChromatin binding 2.60.40.10 93 11 83 3.28 3.92
2uzyB03 81.09 Hepatocyte growth factor receptor activityBasal plasma membranePathways in cancerEpithelial cell signaling in Helicobacter pylori infectionProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 87 6 75 1.72 2.26
1uadC00 80.23 ExocystRattus norvegicusExocyst complex component 2 2.60.40.10 92 7 79 2.66 3.33
2uzyB04 80.12 Basal plasma membraneHepatocyte growth factor receptor activityEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 79 15 74 1.86 2.51
2uzxB02 79.52 Hepatocyte growth factor receptor activityBasal plasma membraneEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 121 5 68 1.83 2.67
1jmxA03 78.58 Quinohemoprotein amine dehydrogenase 60 kDa subunitPseudomonas putida 2.60.40.10 79 13 75 2.73 3.59
1uctA01 78.23 Immunoglobulin alpha Fc receptorIntegral to plasma membraneCD89 antigenHomo sapiensImmune response 2.60.40.10 91 5 80 3.78 4.68
1cwvA03 77.86 InvasinYersinia pseudotuberculosis 2.60.40.920 102 5 79 3.74 4.69
3edfA01 77.81 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.10 90 8 82 3.89 4.70
1cfbA01 77.80 Calcium ion bindingNeuron cell-cell adhesionNerve maturationDrosophila melanogasterEpidermal growth factor receptor signaling pathway 2.60.40.10 99 6 80 3.77 4.67
1p53A01 77.68 Leukocyte migrationAdhesion to symbiontHeterophilic cell-cell adhesionRegulation of leukocyte mediated cytotoxicityT cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell 2.60.40.10 98 5 82 3.47 4.20
1pbyA03 77.48 Paracoccus denitrificansQuinohemoprotein amine dehydrogenase 60 kDa subunit 2.60.40.10 76 7 73 2.50 3.42
1cwvA02 77.21 InvasinYersinia pseudotuberculosis 2.60.40.920 97 5 81 3.41 4.17
1jz7A04 77.16 Galactose metabolismSphingolipid metabolismOther glycan degradationMetabolic pathwaysLactose catabolic process 2.60.40.320 106 8 87 4.21 4.80
1iarB01 76.90 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneInterleukin-4 receptor activityHematopoietic cell lineage 2.60.40.10 96 4 87 3.84 4.39
3cmgA04 76.30 Putative beta-galactosidaseBacteroides fragilis NCTC 9343 2.60.40.1560 87 4 78 3.89 4.93
1fnhA02 76.28 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 8 84 3.84 4.54
2dbjA01 76.13 Integral to plasma membraneSoluble fractionCell-cell signalingC-mer proto-oncogene tyrosine kinase [EC:2.7.10.1]Protein phosphorylation 2.60.40.10 109 6 81 3.85 4.72
1tdqA02 76.05 Nervous system developmentRattus norvegicusTenascinFocal adhesionProteinaceous extracellular matrix 2.60.40.10 90 8 82 3.97 4.80
1k85A00 75.83 Bacillus circulansChitinase A1 2.60.40.10 88 5 71 3.47 4.88
1qr4A01 75.77 TenascinGallus gallus 2.60.40.10 87 8 82 3.92 4.74
2qfpA01 75.66 Fe(3+)-Zn(2+) purple acid phosphatasePhaseolus vulgaris 2.60.40.380 97 12 82 3.41 4.12
1eerB02 75.55 Jak-STAT signaling pathwayIntegral to plasma membraneHematopoietic cell lineageErythropoietin receptor activityErythropoietin receptor 2.60.40.10 102 8 87 4.22 4.82
1qfhA01 75.54 ThermotaxisPhagocytic cupMembrane fractionPhototaxisProtein homodimerization activity 2.60.40.10 111 3 81 4.00 4.88
1j8kA00 75.45 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 94 14 85 4.08 4.77
1iarB02 75.29 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneReceptor signaling protein activityHematopoietic cell lineage 2.60.40.10 92 6 72 3.22 4.47
3k6iA00 75.15 Gallus gallusCadherin-13 2.60.40.60 99 5 83 4.16 4.97
3hn3A02 75.12 Beta-glucuronidaseGlycosaminoglycan degradationGlycosaminoglycan catabolic processMetabolic pathwaysStarch and sucrose metabolism 2.60.40.320 103 9 83 3.90 4.66
2r39A00 75.12 Vibrio parahaemolyticusFixG-related protein 2.60.40.10 107 7 87 4.36 4.96
1cd9B02 75.11 Mus musculusGranulocyte colony-stimulating factor receptorNeutrophil chemotaxis 2.60.40.10 98 7 81 3.99 4.88
1fnfA03 75.08 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 89 7 80 3.47 4.30
1dceA02 75.01 Rattus norvegicusRab geranylgeranyltransferase activityProtein geranylgeranyltransferase type II [EC:2.5.1.60]Geranylgeranyl transferase type-2 subunit alpha 2.60.40.1130 103 3 86 3.79 4.38
3bgaA04 74.82 Galactose metabolismBacteroides thetaiotaomicronBeta-galactosidaseSphingolipid metabolismBeta-galactosidase [EC:3.2.1.23] 2.60.40.320 105 9 88 4.31 4.87
2nziA03 74.77 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 94 7 79 3.55 4.45
1bquA02 74.77 Jak-STAT signaling pathwayOncostatin-M receptor complexResponse to cytokine stimulusPositive regulation of tyrosine phosphorylation of Stat1 proteinPositive regulation of osteoblast differentiation 2.60.40.10 108 8 84 4.05 4.81
2cumA00 74.71 Collagen metabolic processElastic fiber assemblyIntracellularHomo sapiensTenascin-X 2.60.40.10 105 5 81 3.57 4.36
2jllA04 74.69 Prion diseasesNeural cell adhesion moleculePlasma membraneNeuron cell-cell adhesionNeural cell adhesion molecule 2 2.60.40.10 91 8 78 3.48 4.41
1n6uA02 74.69 JAK-STAT cascadeIntegral to plasma membraneType I interferon receptor activityHomo sapiensResponse to virus 2.60.40.10 106 9 81 4.04 4.98
1fnfA02 74.47 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 87 8 81 3.94 4.82
1fnhA01 74.29 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 14 84 4.09 4.83
1svbA04 74.07 Genome polyproteinTick-borne encephalitis virus (WESTERN SUBTYPE) 2.60.40.350 96 3 81 4.01 4.91
1y6kR01 73.96 Interleukin-10 receptor activityPlasma membraneHomo sapiensInterleukin-10 receptor subunit alpha 2.60.40.10 102 3 85 4.03 4.71
2gysA01 73.84 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaCytokine-cytokine receptor interaction 2.60.40.10 95 5 79 3.98 4.99
1cfbA02 73.26 Calcium ion bindingNeuron cell-cell adhesionDrosophila melanogasterNerve maturationEpidermal growth factor receptor signaling pathway 2.60.40.10 106 5 88 4.05 4.57
1kv3A01 72.61 Huntington's diseaseProtein-glutamine gamma-glutamyltransferase 2Homo sapiensTransglutaminase 2 [EC:2.3.2.13] 2.60.40.10 111 3 68 3.29 4.81
1cidA02 72.34 Rattus norvegicusT-cell surface glycoprotein CD4Hematopoietic cell lineageT cell receptor signaling pathwayAntigen processing and presentation 2.60.40.10 71 7 68 3.32 4.86
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Displaying entries 1 to 49 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1svcP02
SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDINITKPA
SVFVQLRRKSDLETSEPKPFLYYPE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1svcP02
SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDINITKPA
SVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQRKRQK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 15 Dec 2006 07:35

Assigning to "2.60.40.10" based on similarity with "1iknC00"

Flow stage update by auto on 15 Dec 2006 07:33

No in_process hits for Domain "1svcP02" ready to be processed

Flow stage update by auto on 15 Dec 2006 07:33

NW result present for Domain "1svcP02"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1svcP02"

Flow stage update by auto on 13 Dec 2006 19:36

Beginning processing for Domain "1svcP02"

Insertion by cuff on 13 Dec 2006 16:18

nice batch of choppings