CATH Domain: 1ss4A00

1ss4A00

PDB 1ss4, Chain A, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.10	Roll
3.10.180	2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
3.10.180.10	2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	Gene3D
3.10.180.10.11
3.10.180.10.11.1
3.10.180.10.11.1.1
3.10.180.10.11.1.1.1
3.10.180.10.11.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1ss4A00

Domain	Start PDB Residue	Stop PDB Residue
1ss4A00	0	148

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.10.180.10.11.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
2rk0A01	81.54	Glyoxalase/bleomycin resistance protein/dioxygenaseFrankia sp. EAN1pec	3.10.180.10	119	21	78	2.49	3.18
2p25A01	80.38	Glyoxylase I family proteinGlyoxylase family proteinEnterococcus faecalis	3.10.180.10	118	17	80	3.24	4.03
2rbbA00	80.15	Burkholderia phytofirmans PsJNGlyoxalase/bleomycin resistance protein/dioxygenase	3.10.180.10	126	13	81	3.23	3.98
3ct8A00	78.81	BH2160 proteinBacillus halodurans	3.10.180.10	131	12	83	4.10	4.93
2qntA01	78.15	Agrobacterium tumefaciens str. C58Putative uncharacterized protein	3.10.180.10	109	13	72	3.14	4.36
2qqzA01	78.06	Bacillus anthracisGlyoxalase family protein	3.10.180.10	113	16	76	3.40	4.42
3ghjA00	78.01	Uncultured bacteriumPutative integron gene cassette protein	3.10.180.10	114	10	73	3.30	4.49

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Domain ATOM Sequence

>pdb|1ss4A00
AAKNKLLRDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAVTPDGHSRIELSRFLTPPTIADH
RTAPVNALGYLRVFTVEDIDEVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELG

BLAST against CATH

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Domain COMBS Sequence

>pdb|1ss4A00
SNAXAKNKLLRXDNVSIVVESLDNAISFFEEIGLNLEGRANVEGEWAGRVTGLGSQCVEIAXXVTPDGHSRIELSRFLTP
PTIADHRTAPVNALGYLRVXFTVEDIDEXVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAEELGNK

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 11 Feb 2008 14:13

Assigning to "3.10.180.10" based on similarity with "1ss4B00"