CATH Domain: 1sqgA04 XML data for domain: 1sqgA04

Molscript image for 1sqgA04
1sqgA04
PDB coordinates for domain 1sqgA04

PDB 1sqg, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.21
3.40.50.150.21.1
3.40.50.150.21.1.1
3.40.50.150.21.1.1.1
3.40.50.150.21.1.1.1.1

Segment boundaries for domain 1sqgA04

Chopping figure for domain 1sqgA04
DomainStart PDB ResidueStop PDB Residue
1sqgA01 5 145
1sqgA02 146 172
1sqgA03 173 230
1sqgA04 231 428

Structural Neighbourhood (47 entries)

There are 47 matching structural neighberhood comparisons for CATH ID 3.40.50.150.21.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 47 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m6yA01 82.41 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 16 86 3.37 3.88
2b3tA02 81.99 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 16 89 3.70 4.14
1i9gA02 81.26 POSSIBLE RNA METHYLTRANSFERASETRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Mycobacterium tuberculosis 3.40.50.150 184 15 78 2.39 3.03
1o54A02 80.89 Thermotoga maritimaTRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Putative uncharacterized protein 3.40.50.150 193 15 79 2.39 3.01
1g8aA02 80.80 Pyrococcus horikoshiiFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseFibrillarin-like pre-rRNA processing protein 3.40.50.150 176 14 79 2.76 3.48
1l3iA00 80.62 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 15 77 2.51 3.23
1xvaA02 80.46 S-adenosylhomocysteine metabolic processRattus norvegicusNucleusGlycine, serine and threonine metabolismGlycine N-methyltransferase activity 3.40.50.150 188 11 82 4.05 4.89
2fpoC00 79.94 Ribosomal RNA small subunit methyltransferase D [EC:2.1.1.52]RRNA (guanine-N2-)-methyltransferase activityRRNA base methylationProtein bindingEscherichia coli K-12 3.40.50.150 176 14 73 2.36 3.22
2p8jA00 79.84 S-adenosylmethionine-dependent methyltransferaseClostridium acetobutylicum 3.40.50.150 200 10 79 3.22 4.05
2fhpA00 79.46 Methylase, putativeEnterococcus faecalis 3.40.50.150 177 11 74 3.05 4.08
1ne2B00 79.46 Putative uncharacterized protein Ta1320Putative methylaseThermoplasma acidophilum 3.40.50.150 180 8 74 2.58 3.48
3bxoA01 79.30 Streptomyces venezuelaeN,N-dimethyltransferase 3.40.50.150 177 12 76 3.04 3.99
2frnA02 79.14 3.40.50.150 185 16 78 3.90 4.95
2yvlA02 79.06 TRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Aquifex aeolicusPutative uncharacterized protein 3.40.50.150 189 11 78 2.65 3.39
2r3sA03 78.93 3.40.50.150 202 11 78 3.16 4.04
1qamA01 78.85 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 12 74 3.33 4.49
1xxlA00 78.75 Uncharacterized methyltransferase ycgJBacillus subtilis 3.40.50.150 231 10 69 3.05 4.38
2ozvA01 78.69 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.150 190 12 75 3.22 4.25
1ej0A00 78.60 Ribosomal RNA large subunit methyltransferase ERRNA (uridine-2'-O-)-methyltransferase activityEnzyme-directed rRNA 2'-O-methylationRibosomal RNA large subunit methyltransferase E [EC:2.1.1.-]Escherichia coli K-12 3.40.50.150 180 15 80 3.18 3.94
2efjA02 78.46 Coffea canephora3,7-dimethylxanthine methyltransferase 3.40.50.150 211 9 81 3.62 4.47
3busB00 78.42 Lechevalieria aerocolonigenesPutative D-glucose O-methyltransferase 3.40.50.150 236 11 68 2.93 4.29
3bzbB00 78.40 Cyanidioschyzon merolae strain 10DUncharacterized protein 3.40.50.150 198 11 80 3.26 4.03
1vl5A00 78.39 BH2331 proteinBacillus halodurans 3.40.50.150 225 15 70 3.28 4.64
3ftdA01 78.26 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 10 77 2.85 3.66
2p35A01 78.17 Trans-aconitate 2-methyltransferaseAgrobacterium tumefaciens str. C58Trans-aconitate 2-methyltransferase [EC:2.1.1.144] 3.40.50.150 161 12 71 2.98 4.16
1vlmA00 78.01 Thermotoga maritimaPutative uncharacterized protein 3.40.50.150 202 11 72 2.86 3.96
3ccfA00 77.86 Cyclopropane-fatty-acyl-phospholipid synthaseTrans-aconitate 2-methyltransferase [EC:2.1.1.144]Anabaena variabilis ATCC 29413 3.40.50.150 232 14 66 3.01 4.51
1dl5A01 77.56 Thermotoga maritimaProtein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]Protein-L-isoaspartate O-methyltransferase 3.40.50.150 201 13 64 3.12 4.86
1im8A00 77.38 Haemophilus influenzaeTRNA (cmo5U34)-methyltransferase 3.40.50.150 219 10 70 3.11 4.39
1nw3A02 77.02 Histone-lysine N-methyltransferase, H3 lysine-79 specificHomo sapiens 3.40.50.150 192 7 78 3.61 4.58
2qm3A02 76.88 Pyrococcus furiosusPutative uncharacterized protein 3.40.50.150 222 10 72 3.11 4.29
1xcjA00 76.86 S-adenosylhomocysteine metabolic processRattus norvegicusArginine and proline metabolismProtein homodimerization activityGuanidinoacetate N-methyltransferase [EC:2.1.1.2] 3.40.50.150 229 11 75 3.60 4.79
2py6A03 76.55 Methylobacillus flagellatus KTMethyltransferase FkbM 3.40.50.150 177 10 77 3.15 4.05
1dctA01 76.29 Modification methylase HaeIIIHaemophilus aegyptius 3.40.50.150 173 11 72 3.00 4.15
1f3lA01 76.19 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 11 59 2.76 4.63
1g55A02 75.83 DNA (cytosine-5-)-methyltransferase activityCysteine and methionine metabolismDNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]Homo sapiensTRNA (cytosine-5-)-methyltransferase 3.40.50.150 180 12 72 3.32 4.60
3c3pA00 75.70 Geobacter sulfurreducensPutative uncharacterized protein 3.40.50.150 178 8 68 3.26 4.75
2jhfA02 75.59 Tyrosine metabolismDrug metabolism - cytochrome P450Fatty acid metabolismMetabolism of xenobiotics by cytochrome P450Equus caballus 3.40.50.720 139 7 63 3.12 4.94
1l1eB00 75.58 Cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]MYCOLIC ACID SYNTHASE PCAA (CYCLOPROPANE SYNTHASE)Mycobacterium tuberculosis 3.40.50.150 260 11 63 3.15 4.99
2o57D00 75.44 3.40.50.150 257 11 63 2.99 4.74
3cvoA00 74.91 Ruegeria pomeroyiPutative uncharacterized protein 3.40.50.150 186 11 70 3.26 4.64
1dusA00 74.70 Methanocaldococcus jannaschiiProtein MJ0882 3.40.50.150 192 8 77 3.58 4.63
1nkvB00 74.11 Uncharacterized protein yjhPProtein bindingEscherichia coli K-12 3.40.50.150 225 9 62 3.10 4.95
3hhpA01 73.84 Citrate cycle (TCA cycle)Pyruvate metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysMalate dehydrogenase [EC:1.1.1.37] 3.40.50.720 138 8 67 3.24 4.82
1gdhA02 73.71 Glycerate dehydrogenaseHyphomicrobium methylovorum 3.40.50.720 184 8 63 3.08 4.84
1dljA01 73.56 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismPentose and glucuronate interconversionsAscorbate and aldarate metabolismMetabolic pathways 3.40.50.720 204 7 66 3.26 4.93
2nacA02 73.19 Pseudomonas sp. 101Formate dehydrogenase 3.40.50.720 190 8 65 3.22 4.90
Displaying entries 1 to 47 (page 1 of 1)


Domain ATOM Sequence

>pdb|1sqgA04
QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW
CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL
QRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK    

Domain COMBS Sequence

>pdb|1sqgA04
QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW
CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL
QRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:49

Cut based on decision in database "DomChop" on "cathdb"