CATH Domain: 1smxA00 XML data for domain: 1smxA00

Molscript image for 1smxA00
1smxA00
PDB coordinates for domain 1smxA00

PDB 1smx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.20
2.40.50.140.20.1
2.40.50.140.20.1.1
2.40.50.140.20.1.1.1
2.40.50.140.20.1.1.1.1

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Segment boundaries for domain 1smxA00

Chopping figure for domain 1smxA00
DomainStart PDB ResidueStop PDB Residue
1smxA00 39 125

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.40.50.140.20.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bzcA05 83.74 Pseudomonas aeruginosaPutative uncharacterized protein 2.40.50.140 96 16 79 3.40 4.29
2ahoB01 82.42 Translation initiation factor eIF-2 alpha subunitSulfolobus solfataricusTranslation initiation factor 2 subunit alpha 2.40.50.140 80 18 77 2.87 3.73
2asbA01 82.39 N utilization substance protein ATranscription elongation protein nusAMycobacterium tuberculosis 2.40.50.140 75 17 73 2.21 3.00
1k3rA02 82.27 Hypothetical proteinMethanothermobacter thermautotrophicus str. Delta HConserved protein 2.40.50.140 59 13 63 2.04 3.23
1hh2P02 82.02 N utilization substance protein AThermotoga maritima 2.40.50.140 63 20 70 2.01 2.87
1kl9A01 81.40 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 2.40.50.140 72 15 65 2.09 3.19
2r7dA03 80.04 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 6 66 2.73 4.09
2qgqA02 79.52 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 10 62 2.06 3.32
1a62A02 76.67 RNA degradationTranscriptional attenuationTranscription termination factor RhoProtein bindingEscherichia coli K-12 2.40.50.140 70 17 73 3.42 4.65
1cukA01 75.81 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 16 71 3.37 4.73
3d31A02 75.52 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 17 52 2.44 4.61
1oxxK02 73.24 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 24 48 2.11 4.37
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1smxA00
ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT
FISLAGS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1smxA00
GSHMLEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER
GNKGAALTTFISLAGS
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:47

Cut based on decision in database "DomChop" on "cathdb"