CATH Domain: 1slmA00 XML data for domain: 1slmA00

Molscript image for 1slmA00
1slmA00
PDB coordinates for domain 1slmA00

PDB 1slm, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.390 Collagenase (Catalytic Domain)
3.40.390.10 Collagenase (Catalytic Domain) Gene3D
3.40.390.10.10
3.40.390.10.10.1
3.40.390.10.10.1.1
3.40.390.10.10.1.1.1
3.40.390.10.10.1.1.1.1

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Segment boundaries for domain 1slmA00

Chopping figure for domain 1slmA00
DomainStart PDB ResidueStop PDB Residue
1slmA00 16 250

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.390.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eakA01 68.16 Zinc ion bindingMetalloendopeptidase activityHomo sapiens72 kDa type IV collagenaseProtein binding 1.10.101.10 63 42 24 0.79 3.19
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1slmA00
LVQKYLENYYDLKKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDVGHFRTFPGIPKWRKTHLTYRIVNY
TPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDE
QWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1slmA00
YPLDGAARGEDTSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDV
GHFRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGP
GNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDIN
GIQSLYGPPPDSPET
BLAST against CATH

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Domain History Events (7)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1slm000" to "1slmA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by auto on 20 Jul 2007 15:41

Assigning to "3.40.390.10" based on similarity with "1su3B01"

Flow stage update by auto on 13 May 2007 22:03

No in_process hits for Domain "1slm000" ready to be processed

Flow stage update by auto on 13 May 2007 22:03

NW result present for Domain "1slm000"

Flow stage update by auto on 10 May 2007 21:59

All required files are present for Domain "1slm000"

Flow stage update by auto on 10 May 2007 14:08

Beginning processing for Domain "1slm000"

Insertion by cuff on 10 May 2007 12:32

good chopping