CATH Domain: 1si5H01 XML data for domain: 1si5H01

Molscript image for 1si5H01
1si5H01
PDB coordinates for domain 1si5H01

PDB 1si5, Chain H, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.77
2.40.10.10.77.1
2.40.10.10.77.1.1
2.40.10.10.77.1.1.1
2.40.10.10.77.1.1.1.1

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Segment boundaries for domain 1si5H01

Chopping figure for domain 1si5H01
DomainStart PDB ResidueStop PDB Residue
1si5H01 495 505
1si5H01 597 711
1si5H02 506 596
1si5H02 712 728

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.10.10.77.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q3xA02 86.36 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 24 86 2.44 2.81
1lcyA02 80.27 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Endoplasmic reticulum membraneParkinson's diseaseNucleus 2.40.10.10 84 16 68 3.44 4.99
1dleB02 78.26 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 142 16 68 3.09 4.52
2o8mA02 77.84 Genome polyproteinHepatitis C virus subtype 1a 2.40.10.10 87 12 65 3.12 4.76
1befA02 74.38 2.40.10.10 85 10 64 3.18 4.91
1svpA02 73.49 Sindbis virusStructural polyprotein 2.40.10.10 86 11 59 2.42 4.06
3fanA02 72.88 Porcine reproductive and respiratory syndrome virusNon-structural protein 2.40.10.10 69 17 53 2.42 4.50
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1si5H01
VVNGIPTRTNIIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQLNESEICAGAEKIGSGPCEGD
YGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1si5H01
VVNGIPTRTNIIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIG
SGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAY
BLAST against CATH

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Domain History Events (7)

Domain assigned by auto on 14 Aug 2007 22:55

Assigning to "2.40.10.10" based on similarity with "1shyA01"

Flow stage update by auto on 14 Aug 2007 22:45

No in_process hits for Domain "1si5H01" ready to be processed

Flow stage update by auto on 18 Jul 2007 18:50

Domain "1si5H01" hits Domain "1shyA01" (100% over 100%) which is currently in process

Flow stage update by auto on 18 Jul 2007 18:50

NW result present for Domain "1si5H01"

Flow stage update by auto on 16 Jul 2007 22:37

All required files are present for Domain "1si5H01"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "1si5H01"

Insertion by auto on 14 Jul 2007 04:19

Final ChopClose added based on similarity with "1shyA"