CATH Domain: 1sfcH00 XML data for domain: 1sfcH00

Molscript image for 1sfcH00
1sfcH00
PDB coordinates for domain 1sfcH00

PDB 1sfc, Chain H, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.13
1.20.5.110.13.1
1.20.5.110.13.1.1
1.20.5.110.13.1.1.1
1.20.5.110.13.1.1.1.1

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Segment boundaries for domain 1sfcH00

Chopping figure for domain 1sfcH00
DomainStart PDB ResidueStop PDB Residue
1sfcH00 132 203

Structural Neighbourhood (46 entries)

There are 46 matching structural neighberhood comparisons for CATH ID 1.20.5.110.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 46 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jocA01 85.03 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 11 83 2.46 2.95
1gd2F00 84.87 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 3 86 3.02 3.51
1gk4C00 84.45 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 12 76 2.97 3.89
1jcdB00 83.97 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 13 62 1.75 2.80
1gu4A00 83.94 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 77 3.23 4.15
2e42A00 83.85 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 77 3.32 4.27
1nwqA00 83.50 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 10 83 2.19 2.63
1uixA00 83.15 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 8 84 3.37 3.98
1a02F00 82.72 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 5 69 2.10 3.02
1l2pA00 82.45 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 11 84 3.65 4.31
1svfC00 82.17 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 8 86 3.50 4.06
3efgA00 81.66 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 59 1.39 2.33
1jekA00 81.42 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 5 55 1.45 2.61
1gmjD00 81.24 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 5 77 3.51 4.51
3gwoA00 80.91 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 5 73 3.21 4.36
3kpeA00 80.05 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 6 65 2.10 3.22
1hf9A00 79.79 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 12 56 1.78 3.13
1ik9B02 79.59 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 2 62 3.11 4.96
2ifoA00 79.56 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 4 63 2.22 3.47
1kilE00 79.12 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 7 56 1.71 3.00
1pl5A00 78.61 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 2 53 1.74 3.26
3effK02 78.10 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 8 62 2.66 4.26
1mg1A03 77.93 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 5 51 1.97 3.85
1dp5B00 77.93 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 9 43 0.66 1.53
1junA00 76.85 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 9 59 1.91 3.20
1kv4A00 76.54 Moricin-1Bombyx mori 1.20.5.750 42 7 58 2.50 4.29
1czqA00 76.52 1.20.5.170 45 13 62 3.12 4.99
1xrdA01 75.90 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 0 59 2.72 4.55
1u57A00 74.80 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 12 62 2.93 4.69
1gk6B00 74.75 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 0 47 1.96 4.15
1s5lX00 74.68 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 7 55 2.50 4.50
1piqA00 74.08 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 43 1.48 3.44
1a2xB00 73.85 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 43 1.59 3.69
2r44A01 73.19 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 36 0.72 1.99
1fdoA05 72.01 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 37 1.51 4.03
1vf5C03 71.95 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 3 44 2.00 4.50
1hj0A00 70.50 Bos taurusThymosin beta-10 1.20.5.520 41 7 31 1.17 3.66
2oarE02 68.45 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 0 30 1.37 4.48
1be3K00 68.04 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 30 0.91 2.98
2p10B02 67.44 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 7 31 0.93 2.91
2pp6A01 65.60 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 9 29 0.93 3.19
2oarA02 65.11 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 23 0.43 1.82
3c8vA04 63.72 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 26 26 0.99 3.75
1h8bB00 62.31 TitinOryctolagus cuniculus 1.20.5.510 23 13 22 0.52 2.34
1d66B02 58.70 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 20 0.57 2.74
1mkmA02 57.14 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 19 0.54 2.78
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Displaying entries 1 to 46 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1sfcH00
GFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1sfcH00
VVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA
TKMLGSG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"