CATH Domain: 1sesA01 XML data for domain: 1sesA01

Molscript image for 1sesA01
1sesA01
PDB coordinates for domain 1sesA01

PDB 1ses, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.40 Gene3D
1.10.287.40.1
1.10.287.40.1.1
1.10.287.40.1.1.1
1.10.287.40.1.1.1.1
1.10.287.40.1.1.1.1.1

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Segment boundaries for domain 1sesA01

Chopping figure for domain 1sesA01
DomainStart PDB ResidueStop PDB Residue
1sesA01 1 102
1sesA02 103 420

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 1.10.287.40.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1l8dA00 87.32 Exonuclease SbcCPyrococcus furiosusDNA double-strand break repair rad50 ATPase 1.10.287.510 103 9 80 2.49 3.09
1skvA00 83.06 Protein D-63Sulfolobus virus 1 1.10.287.660 62 9 58 1.56 2.65
1serA01 82.68 Aminoacyl-tRNA biosynthesisThermus thermophilus HB27Seryl-tRNA synthetaseSeryl-tRNA synthetase [EC:6.1.1.11] 1.10.287.40 53 100 51 0.72 1.39
1urfA00 82.60 CytoplasmSerine/threonine-protein kinase N1Plasma membraneHomo sapiensActivation of JUN kinase activity 1.10.287.160 81 7 72 3.47 4.78
2fb5A01 82.23 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 5 69 2.88 4.14
1nt2B02 82.06 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 11 65 2.16 3.29
1m5iA00 81.91 Adenomatous polyposis coli proteinBeta-catenin destruction complexPathways in cancerNegative regulation of microtubule depolymerizationPositive regulation of pseudopodium assembly 1.10.287.450 105 6 80 3.53 4.41
1g4yB00 81.10 Rattus norvegicusSmall conductance calcium-activated potassium channel protein 2Small conductance calcium-activated potassium channel activityIntegral to membranePotassium ion transport 1.10.287.70 81 12 64 2.65 4.10
1ez3A00 80.55 Myosin head/neck bindingProtein domain specific bindingActomyosinRattus norvegicusProtein heterodimerization activity 1.20.58.70 124 10 63 3.10 4.87
3csxA00 80.48 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 14 55 1.85 3.31
2ck3G01 80.48 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 61 9 50 1.76 3.45
1nkdA00 80.32 Regulatory protein ropEscherichia coli 1.10.287.230 59 13 57 2.40 4.15
1ku9A02 80.30 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 14 61 2.60 4.21
1fxkC00 80.30 Methanothermobacter thermautotrophicus str. Delta HPrefoldin subunit alphaPrefoldin alpha subunit 1.10.287.370 133 11 56 2.05 3.64
2r9iA00 80.02 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 10 57 2.78 4.81
1bmfG00 79.74 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 7 55 1.65 2.96
3fx7A00 79.15 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 9 73 2.96 4.03
2ih3C00 78.55 Streptomyces lividansVoltage-gated potassium channel 1.10.287.70 97 4 63 2.87 4.50
1lrzA03 78.52 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 14 58 2.88 4.90
3bz1Z00 77.64 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 6 48 1.52 3.16
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1sesA01
MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEA
KRLEEALREKEARLEALLLQVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1sesA01
MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEA
KRLEEALREKEARLEALLLQVP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"