CATH Domain: 1serA01 XML data for domain: 1serA01

Molscript image for 1serA01
1serA01
PDB coordinates for domain 1serA01

PDB 1ser, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.40 Gene3D
1.10.287.40.2
1.10.287.40.2.1
1.10.287.40.2.1.1
1.10.287.40.2.1.1.1
1.10.287.40.2.1.1.1.1

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Segment boundaries for domain 1serA01

Chopping figure for domain 1serA01
DomainStart PDB ResidueStop PDB Residue
1serA01 1 102
1serA02 103 420

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.287.40.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o9gA02 78.05 RRNA methyltransferase AviRaStreptomyces viridochromogenes 1.10.287.540 43 6 58 2.40 4.10
2hepA00 76.73 Bacillus subtilisUPF0291 protein ynzC 1.10.287.540 42 9 62 2.79 4.48
3csxA00 76.64 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 9 49 1.72 3.50
1rsoA01 76.48 Basal plasma membraneRattus norvegicusPresynaptic membranePostsynaptic membraneProtein C-terminus binding 1.10.287.470 51 7 60 2.92 4.84
1tvkA03 75.74 Gap junctionTubulin alphaTubulin alpha-1D chainBos taurus 1.10.287.600 56 5 57 2.73 4.78
1tvkB03 75.60 Gap junctionPathogenic Escherichia coli infectionTubulin betaBos taurusTubulin beta-2B chain 1.10.287.600 54 5 59 2.69 4.54
2p0tA02 75.34 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0307 protein PSPTO_4464 1.10.60.30 72 16 68 3.25 4.78
3bz1Z00 75.24 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 3 45 1.18 2.61
1ku9A02 74.06 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 11 46 2.24 4.87
2ck3G01 73.23 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 61 5 42 1.90 4.46
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1serA01
MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQREKEARLEALLLQVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1serA01
MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQREKEARLEALLLQVP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"