CATH Domain: 1sekA02 XML data for domain: 1sekA02

Molscript image for 1sekA02
1sekA02
PDB coordinates for domain 1sekA02

PDB 1sek, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.11
2.30.39.10.11.1
2.30.39.10.11.1.1
2.30.39.10.11.1.1.1
2.30.39.10.11.1.1.1.1

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Segment boundaries for domain 1sekA02

Chopping figure for domain 1sekA02
DomainStart PDB ResidueStop PDB Residue
1sekA01 44 179
1sekA01 287 332
1sekA01 343 352
1sekA02 180 286
1sekA02 333 342

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.30.39.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1k9oI02 90.79 Manduca sextaAlaserpinProtein binding 2.30.39.10 161 98 72 0.46 0.63
3f02B02 86.79 Peripheral nervous system developmentNeuroserpinHomo sapiensCentral nervous system developmentSerine-type endopeptidase inhibitor activity 2.30.39.10 99 23 82 1.96 2.39
1hp7A01 86.18 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 26 81 2.11 2.60
1jmoA02 85.77 Heparin cofactor IIHomo sapiensHeparin cofactor 2Complement and coagulation cascades 2.30.39.10 150 31 70 1.25 1.77
1imvA01 84.48 Negative regulation of angiogenesisHomo sapiensPigment epithelium-derived factorCell proliferationPositive regulation of neurogenesis 2.30.39.10 169 30 68 1.80 2.65
1mtpA02 84.28 Proteinase inhibitor I4, serpinThermobifida fusca YX 2.30.39.10 91 21 77 2.23 2.87
2b5tI02 83.91 Antithrombin IIIProtease bindingHomo sapiensAntithrombin-IIIExtracellular space 2.30.39.10 146 21 70 3.24 4.59
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1sekA02
FKGSWKDKFNKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKL
KDPKALSRAEERLYNTEVEIYLPKFKIIEVNEEGAEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1sekA02
FKGSWKDKFNKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVDGITALEQKL
KDPKALSRAEERLYNTEVEIYLPKFKIIEVNEEGAEA
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1sek002" to "1sekA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"