CATH Domain: 1se8A02 XML data for domain: 1se8A02

Molscript image for 1se8A02
1se8A02
PDB coordinates for domain 1se8A02

PDB 1se8, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.3
2.40.50.140.3.1
2.40.50.140.3.1.1
2.40.50.140.3.1.1.1
2.40.50.140.3.1.1.1.1

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Segment boundaries for domain 1se8A02

Chopping figure for domain 1se8A02
DomainStart PDB ResidueStop PDB Residue
1se8A01 3 116
1se8A02 117 233

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.40.50.140.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vw9B00 89.26 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 28 89 1.76 1.96
3ullA00 87.16 DNA replicationPositive regulation of helicase activityMitochondrial nucleoidSingle-stranded DNA-binding protein, mitochondrialHomologous recombination 2.40.50.140 106 17 90 3.72 4.11
3lgjB00 86.70 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 22 83 2.41 2.90
1x3eA00 86.08 Homologous recombinationDNA replicationMycobacterium smegmatis str. MC2 155Single-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 110 28 84 3.00 3.55
1wocC00 84.78 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 14 87 3.38 3.85
1se8A01 84.73 Single-stranded DNA-binding proteinDeinococcus radiodurans 2.40.50.140 99 28 83 2.44 2.94
1qvcD00 84.41 Homologous recombinationDNA replicationMismatch repairEscherichia coli O157:H7Single-strand DNA-binding protein 2.40.50.140 140 31 70 1.99 2.81
2hqlA01 83.66 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 14 79 2.66 3.36
1fjgQ00 79.39 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 10 71 2.66 3.71
1nnxA00 78.94 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 10 67 3.13 4.61
2oq0C01 76.60 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 101 6 71 3.38 4.71
1cukA01 76.53 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 9 60 2.81 4.65
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1se8A02
QDAGGGVRSGANEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENKELRKGDPV
IGRLVNEGWTRNSTRVEATRVEALAR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1se8A02
QDAGGGVRXSGAXNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENXKELRKG
DPVXIXGRLVNEGWTDKDGNKRNSTRVEATRVEALAR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:46

Cut based on decision in database "DomChop" on "cathdb"