CATH Domain: 1se8A01 XML data for domain: 1se8A01

Molscript image for 1se8A01
1se8A01
PDB coordinates for domain 1se8A01

PDB 1se8, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.5
2.40.50.140.5.1
2.40.50.140.5.1.1
2.40.50.140.5.1.1.1
2.40.50.140.5.1.1.1.1

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Segment boundaries for domain 1se8A01

Chopping figure for domain 1se8A01
DomainStart PDB ResidueStop PDB Residue
1se8A01 3 116
1se8A02 117 233

Structural Neighbourhood (22 entries)

There are 22 matching structural neighberhood comparisons for CATH ID 2.40.50.140.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 22 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vw9B00 86.95 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 26 86 2.17 2.50
1x3eA00 86.16 Homologous recombinationDNA replicationMycobacterium smegmatis str. MC2 155Single-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 110 32 89 4.24 4.76
3lgjB00 85.42 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 25 88 2.38 2.68
3ullA00 85.16 DNA replicationPositive regulation of helicase activityMitochondrial nucleoidSingle-stranded DNA-binding protein, mitochondrialHomologous recombination 2.40.50.140 106 19 86 1.88 2.17
1wocC00 84.78 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 14 90 2.78 3.06
2hqlA01 83.46 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 14 87 3.04 3.46
1ltlA02 81.48 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 18 84 3.24 3.86
2oq0B02 80.52 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 86 11 71 2.97 4.14
1nnxA00 79.86 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 9 71 3.04 4.24
1lm0A00 79.68 Cytochrome c-type biogenesis protein ccmECytochrome c-type biogenesis protein CcmEShewanella oneidensis 2.40.50.140 101 10 74 2.87 3.86
1cukA01 79.65 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 10 66 3.01 4.51
1jmcA02 78.51 Replication factor A1DNA-dependent DNA replicationNucleotide excision repairDNA replicationPML body 2.40.50.140 124 7 69 3.28 4.73
2oq0C01 78.28 Gamma-interferon-inducible protein 16NucleolusMonocyte differentiationDouble-stranded DNA bindingProtein binding 2.40.50.140 101 11 80 3.07 3.83
2zteA01 77.61 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 10 64 2.00 3.09
3kdfA00 77.34 DNA replicationNucleotide excision repairCytoplasmHomologous recombinationReplication protein A 14 kDa subunit 2.40.50.140 110 8 64 3.19 4.94
2ztdA01 77.29 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 9 66 2.24 3.36
1fjgQ00 76.81 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 11 71 3.25 4.57
1miuA03 76.52 HemopoiesisInner cell mass cell proliferationResponse to X-rayPositive regulation of mitotic cell cycleDNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator 2.40.50.140 117 15 78 3.68 4.68
1c9oA00 74.63 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 15 66 3.25 4.88
1bkbA02 73.64 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 14 62 2.97 4.74
3d31A02 73.32 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 10 46 2.15 4.63
1g29102 72.93 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 13 45 1.98 4.36
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Displaying entries 1 to 22 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1se8A01
RGNHVYLIGALARDPELRYTGNGAVFEATVAGEDRVRNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEKR
SAVNVKALREQLGTQPELI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1se8A01
XARGXNHVYLIGALARDPELRYTGNGXAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVE
GTLEYRQWEAPEGGKRSAVNVKALRXEQLGTQPELI
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:46

Cut based on decision in database "DomChop" on "cathdb"