CATH Domain: 1sc6A03 XML data for domain: 1sc6A03

Molscript image for 1sc6A03
1sc6A03
PDB coordinates for domain 1sc6A03

PDB 1sc6, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.8
3.30.70.260.8.1
3.30.70.260.8.1.1
3.30.70.260.8.1.1.1
3.30.70.260.8.1.1.1.1

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Segment boundaries for domain 1sc6A03

Chopping figure for domain 1sc6A03
DomainStart PDB ResidueStop PDB Residue
1sc6A01 7 108
1sc6A01 296 326
1sc6A02 109 295
1sc6A03 328 409

Structural Neighbourhood (48 entries)

There are 48 matching structural neighberhood comparisons for CATH ID 3.30.70.260.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 48 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2nzcA00 87.51 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 12 88 3.14 3.54
2qmwA03 86.40 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 10 86 1.96 2.28
1u8sA02 84.78 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 11 86 3.58 4.12
1q5yD00 84.70 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 10 88 3.63 4.09
1u8sA01 84.26 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 11 84 3.98 4.69
1u0sA00 82.56 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 7 84 4.03 4.75
1i1gA02 82.55 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 10 81 3.43 4.23
1uv7A00 81.40 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 2 68 2.30 3.36
2pehA01 81.25 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 6 81 3.17 3.87
1rk8A00 81.24 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 16 83 3.86 4.60
3h90A02 80.91 Ferrous-iron efflux pump FieFCellular cadmium ion homeostasisCellular zinc ion homeostasisCadmium ion transportEscherichia coli K-12 3.30.70.1350 84 11 77 3.83 4.95
1l3kA02 80.45 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 11 87 3.23 3.70
1x5uA01 80.20 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 13 86 3.26 3.78
1fjeB01 80.06 NucleolinMesocricetus auratus 3.30.70.330 81 12 87 3.19 3.64
1nu4A00 79.41 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 13 75 3.42 4.51
2rhsD06 79.18 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 12 75 3.23 4.31
2qrrA00 78.99 D-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetNVibrio parahaemolyticusABC transporters 3.30.70.260 93 8 80 3.78 4.69
1x5oA01 78.89 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 5 79 3.31 4.19
2qfjA02 78.80 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 12 77 3.40 4.41
2x1fA00 78.56 Protein heterodimerization activityMRNA 3'-end-processing protein RNA15MRNA polyadenylationSaccharomyces cerevisiaeMRNA cleavage 3.30.70.330 94 6 73 3.57 4.86
2errA01 78.50 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 13 84 3.45 4.09
1ptfA00 78.43 Phosphocarrier protein HPrPhosphocarrier proteinEnterococcus faecalis 3.30.1340.10 87 7 71 2.82 3.96
1fxlA02 78.32 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 12 84 3.93 4.63
2dgsA01 78.24 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 15 84 3.39 4.02
1cvjA01 78.21 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 10 86 2.99 3.47
2u2fA00 78.08 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 11 78 3.32 4.21
1s99A01 78.05 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 7 82 3.99 4.85
1v8cA02 77.83 Threonine synthaseThermus thermophilus 3.30.1370.80 80 11 71 2.98 4.18
1jmtA00 77.58 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 13 69 3.06 4.41
3cedA00 77.40 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 12 79 3.60 4.54
1mw7A03 77.35 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 8 82 3.66 4.45
2rb7A02 77.30 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 10 68 3.06 4.48
1d8zA00 77.29 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 13 80 3.74 4.62
1uw4A00 77.09 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 2 71 2.67 3.75
2bopA00 76.94 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 6 77 3.75 4.83
1gmuA01 76.86 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 7 69 2.87 4.12
1earA02 76.51 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 4 70 3.17 4.47
1no8A00 76.44 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 17 88 4.31 4.86
1fxlA01 76.44 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 12 82 3.94 4.79
1lfpA03 76.01 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 8 78 3.50 4.46
2hiyA02 75.97 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1260 91 8 73 3.39 4.60
2hfvA01 75.74 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 9 83 3.83 4.58
1f0xA04 75.73 Pyruvate metabolismD-lactate dehydrogenaseNAD or NADH bindingEscherichia coli K-12D-lactate dehydrogenase [EC:1.1.1.28] 3.30.1370.20 85 6 78 3.38 4.29
1harA02 75.47 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 5 77 3.45 4.47
1wj9A01 75.46 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 5 72 3.12 4.31
1in0A01 75.20 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 1 74 3.32 4.45
1eayD00 73.71 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 70 3.18 4.49
1vgyA02 72.92 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 6 63 3.11 4.92
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Displaying entries 1 to 48 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1sc6A03
PEVSLPLHGGRRLHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQGYVVIDIEADEDVAEKALQAKAIPGTIRARLL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1sc6A03
PEVSLPLHGGRRLXHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQAXKAIPGTIRAR
LL
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 25 Apr 2009 17:35

Assigning to "3.30.70.260" based on similarity with "1ybaA03"

Flow stage update by auto on 25 Apr 2009 17:11

No in_process hits for Domain "1sc6A03" ready to be processed

Flow stage update by auto on 25 Apr 2009 17:11

NW result present for Domain "1sc6A03"

Flow stage update by auto on 25 Apr 2009 08:08

All required files are present for Domain "1sc6A03"

Flow stage update by auto on 24 Apr 2009 02:31

Beginning processing for Domain "1sc6A03"

Insertion by auto on 23 Apr 2009 20:32

Final ChopClose added based on similarity with "1sc6B"