CATH Domain: 1sb6A00 XML data for domain: 1sb6A00

Molscript image for 1sb6A00
1sb6A00
PDB coordinates for domain 1sb6A00

PDB 1sb6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.2
3.30.70.100.2.1
3.30.70.100.2.1.1
3.30.70.100.2.1.1.1
3.30.70.100.2.1.1.1.9

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Segment boundaries for domain 1sb6A00

Chopping figure for domain 1sb6A00
DomainStart PDB ResidueStop PDB Residue
1sb6A00 1 64

Structural Neighbourhood (93 entries)

There are 93 matching structural neighberhood comparisons for CATH ID 3.30.70.100.2.1.1.1.9 (SIMAX score < 5)

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Displaying entries 1 to 93 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qifA00 91.51 Bacillus subtilisCopper chaperone copZ 3.30.70.100 69 26 91 1.57 1.72
1osdA00 88.91 Hypothetical periplasmic mercuric ion binding proteinCupriavidus metallidurans CH34 3.30.70.100 72 28 87 1.87 2.14
1qupA01 88.34 [EC:4.2.-.-]NucleusProtein bindingSuperoxide dismutase copper chaperone activityCytosol 3.30.70.100 68 12 88 1.88 2.13
3cjkB00 88.24 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 19 84 1.78 2.12
1mwyA00 87.84 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 25 86 1.82 2.11
1yjrA00 87.82 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 20 84 1.84 2.19
2kt2A00 86.54 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 17 91 2.07 2.27
2ofhX00 84.96 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 20 88 2.33 2.63
2g9oA00 84.80 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 17 81 2.40 2.93
1opzA00 84.71 Cu2+-exporting ATPase [EC:3.6.3.4]Bacillus subtilisCopper-exporting P-type ATPase A 3.30.70.100 76 22 82 1.90 2.29
3dxsX00 84.44 Cu2+-exporting ATPase [EC:3.6.3.4]Arabidopsis thalianaCopper-transporting ATPase RAN1Regulation of stomatal movementGolgi apparatus 3.30.70.100 66 25 86 3.54 4.10
1harA02 83.45 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 12 86 2.49 2.86
1earA02 82.68 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 7 79 3.03 3.80
1in0A01 82.49 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 15 88 3.10 3.50
2nyiA01 81.66 3.30.70.260 77 12 81 3.25 3.97
1eayD00 81.47 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 4 89 3.49 3.88
2x3dF01 81.11 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 12 75 3.17 4.23
1vr6A01 81.11 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 7 80 2.99 3.74
2qmwA03 81.01 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 6 80 3.48 4.31
1fjeB01 80.92 NucleolinMesocricetus auratus 3.30.70.330 81 17 75 2.41 3.20
1y3jA00 80.74 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 77 14 81 2.46 3.01
1u0sA00 80.40 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 17 70 2.68 3.78
1o8bA02 80.25 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 9 81 3.02 3.72
1konA03 80.20 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 14 70 2.42 3.42
2f1fA01 80.05 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 9 79 3.05 3.82
2rhsD06 79.98 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 7 69 2.76 3.98
1lfpA03 79.54 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 11 76 2.18 2.84
1wr8A02 79.43 Pyrococcus horikoshiiPhosphoglycolate phosphatase 3.90.1070.10 69 7 73 2.87 3.88
1mw7A03 78.97 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 9 80 3.42 4.28
2fmrA00 78.88 CytoplasmSoluble fractionNucleolusHomo sapiensFragile X mental retardation 1 protein 3.30.1370.10 65 9 89 4.29 4.81
2hfvA01 78.87 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 14 77 3.31 4.25
1s1tA02 78.77 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 15 65 2.84 4.33
1y7pB01 78.75 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 11 77 3.09 3.99
1dloB02 78.71 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 93 11 65 2.33 3.55
1lwcB02 78.64 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 87 11 67 2.39 3.52
1nh8A03 78.42 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 6 83 3.99 4.77
1q5yD00 77.93 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 3 72 3.30 4.55
1fxlA01 77.81 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 3 84 3.08 3.64
3cj8B02 77.48 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 11 69 2.83 4.06
2zd1A02 77.43 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 11 64 2.48 3.82
3ce8A00 77.42 Shewanella baltica OS155Putative uncharacterized protein 3.30.70.120 87 12 70 3.40 4.85
1u7lA03 77.28 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Vacuolar acidificationOxidative phosphorylationVacuolar proton-transporting V-type ATPase, V1 domainProtein binding 3.30.70.100 90 6 65 2.91 4.44
1gmuA01 77.20 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 9 82 3.61 4.40
1xtzA02 76.96 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 9 70 2.95 4.20
2nuhA00 76.86 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 15 57 2.49 4.32
1nzaA00 76.76 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 14 58 2.78 4.77
1uv7A00 76.66 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 11 67 3.11 4.60
1u8sA01 76.59 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 9 73 3.23 4.41
1lfwA03 76.59 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 12 59 2.82 4.77
1fxlA02 76.54 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 6 75 3.20 4.25
1m1hA01 76.45 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 12 60 2.82 4.70
1l3kA02 76.30 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 9 78 3.50 4.48
3dlkB02 76.28 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 98 11 62 2.95 4.74
1kn6A00 76.28 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 6 73 3.68 4.97
2w25A02 76.25 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 6 67 3.16 4.65
1x5uA01 76.21 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 7 76 3.22 4.22
2opsB02 76.13 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 49 4 61 2.33 3.76
1no8A00 76.04 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 3 78 3.87 4.95
2do0A01 76.03 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 6 80 3.27 4.07
1i1gA02 76.00 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 7 72 3.36 4.62
1vi7A02 75.84 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 4 85 3.92 4.56
2qmxA03 75.81 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 3 67 3.14 4.63
1sqgA03 75.77 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 8 87 3.91 4.48
1xxaC00 75.62 Transcriptional regulator of arginine metabolismArginine repressorEscherichia coli K-12Plasmid recombination 3.30.1360.40 73 4 72 3.26 4.49
2pehA01 75.49 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 4 75 3.29 4.33
1sc6A03 75.44 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 12 77 3.60 4.66
1l3kA01 75.38 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 11 72 3.35 4.61
1h2vZ00 75.38 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 11 66 3.04 4.58
1cvjA01 75.22 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 3 79 3.16 3.99
1usmA00 75.20 Transcriptional coactivatorThermus thermophilus 3.30.1360.20 77 7 71 3.51 4.91
2qfjA02 75.09 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 4 71 3.39 4.76
1rk8A00 75.06 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 15 72 3.35 4.63
1mlaA01 75.04 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 11 75 3.15 4.18
3sxlA02 74.87 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 5 65 2.34 3.60
1ufwA00 74.72 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 7 64 2.95 4.59
3c19A01 74.61 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 1 61 2.81 4.59
2j8sA06 74.59 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 9 60 2.95 4.92
1gxuA00 74.52 Carbamoyltransferase hypFHydrogenase maturation protein HypFEscherichia coli K-12 3.30.70.100 88 9 68 2.78 4.08
2wriY03 74.48 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 11 81 4.05 4.96
1utaA00 74.32 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 11 74 3.21 4.34
1x5oA01 74.21 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 4 73 3.37 4.60
1cvjG02 74.13 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 7 71 3.50 4.89
1nm2A01 74.05 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 6 76 3.79 4.96
1zpvB00 73.88 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 7 77 3.84 4.94
2dgsA01 73.82 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 11 68 3.09 4.51
1fjeB02 73.41 NucleolinMesocricetus auratus 3.30.70.330 84 11 65 3.07 4.69
1sjqA00 73.23 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 1 71 3.29 4.60
2hzcA00 73.10 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 4 66 3.04 4.56
2u2fA00 72.75 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 6 74 3.63 4.90
2fyxA00 72.34 Putative transposaseTransposase, putativeDeinococcus radiodurans 3.30.70.1290 130 9 46 2.27 4.92
1cvjH02 72.00 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 5 63 3.09 4.87
2bm0A03 71.53 Elongation factor GElongation factor EF-G [EC:3.6.5.3]Thermus thermophilus 3.30.70.870 51 7 53 2.48 4.60
1d1rA00 70.07 Translation initiation factor SUI1Uncharacterized protein yciHEscherichia coli K-12 3.30.780.10 83 6 66 3.23 4.87
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Displaying entries 1 to 93 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1sb6A00
MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1sb6A00
MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:46

Cut based on decision in database "DomChop" on "cathdb"