CATH Domain: 1s55A00 XML data for domain: 1s55A00

Molscript image for 1s55A00
1s55A00
PDB coordinates for domain 1s55A00

PDB 1s55, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.40 Gene3D
2.60.120.40.9
2.60.120.40.9.1
2.60.120.40.9.1.1
2.60.120.40.9.1.1.1
2.60.120.40.9.1.1.1.1

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Segment boundaries for domain 1s55A00

Chopping figure for domain 1s55A00
DomainStart PDB ResidueStop PDB Residue
1s55A00 161 316

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 2.60.120.40.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tnrA00 88.35 Lymphotoxin-alphaType I diabetes mellitusSignal transductionLymphotoxin alpha (TNF superfamily, member 1)Induction of apoptosis 2.60.120.40 144 22 91 2.63 2.87
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1s55A00
AQPFAHLTINAASIPSGSHKVTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANICFRHHETSGSVPTDYLQLMVY
VVKTSIKIPSSHNLMKGGSTKNWSGNSEFHFYSINVGGFFKLRAGEEISIQVSNPSLLDPDQDATYFGAFKVQDID
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1s55A00
AQPFAHLTINAASIPSGSHKVTLSSWYHDRGWAKISNMTLSNGKLRVNQDGFYYLYANICFRHHETSGSVPTDYLQLMVY
VVKTSIKIPSSHNLMKGGSTKNWSGNSEFHFYSINVGGFFKLRAGEEISIQVSNPSLLDPDQDATYFGAFKVQDID
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:51

Assigning to "2.60.120.40" based on similarity with "1jtzZ00" (NWSI: 100, NWO: 99.3589743589744, SPS: 95.36, SPO: 99, RMSD: 0.78)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1s55A00"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1s55A00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1s55A00"

Insertion by auto on 09 Mar 2006 02:54

Final ChopClose added based on similarity with "1s55B" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 95.16, SI: 100, SO: 100]