CATH Domain: 1s0iA02 XML data for domain: 1s0iA02

Molscript image for 1s0iA02
1s0iA02
PDB coordinates for domain 1s0iA02

PDB 1s0i, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.8
2.60.120.200.8.1
2.60.120.200.8.1.1
2.60.120.200.8.1.1.1
2.60.120.200.8.1.1.1.1

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Segment boundaries for domain 1s0iA02

Chopping figure for domain 1s0iA02
DomainStart PDB ResidueStop PDB Residue
1s0iA01 1 397
1s0iA02 398 632

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.120.200.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n1tA02 93.19 Trypanosoma rangeliSialidase 2.60.120.200 202 69 89 1.33 1.49
2vu9A01 80.36 Botulinum neurotoxin type AClostridium botulinum 2.60.120.200 227 10 86 3.99 4.60
1w0pA01 75.56 Vibrio choleraeSialidase 2.60.120.200 177 5 66 2.97 4.45
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1s0iA02
PAGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERVPNGLKFAGVGGGALWPVSQQGQNQRYHFANHAFTLVA
SVTIHEVPKGASPLLGASLDSSGGKKLLGLSYDKRHQWQPIYGSTPVTPTGSWEMGKRYHVVLTMANKIGSVYIDGEPLE
GSGQTVVPDERTPDISHFYVGGYKRSGMPTDSRVTVNNVLLYNRQLNAEEIRTLFLSQDLIGTEAH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1s0iA02
PADPAASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERVPNGLKFAGVGGGALWPVSQQGQNQRYHF
ANHAFTLVASVTIHEVPKGASPLLGASLDSSGGKKLLGLSYDKRHQWQPIYGSTPVTPTGSWEMGKRYHVVLTMANKIGS
VYIDGEPLEGSGQTVVPDERTPDISHFYVGGYKRSGMPTDSRVTVNNVLLYNRQLNAEEIRTLFLSQDLIGTEAHMD
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:49

Assigning to "2.60.120.200" based on similarity with "1s0jA02" (NWSI: 100, NWO: 100, SPS: 99.24, SPO: 100, RMSD: 0.14)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1s0iA02"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1s0iA02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1s0iA02"

Insertion by auto on 05 Mar 2006 23:43

Cut based on decision in database "DomChop" on "cathdb"