CATH Domain: 1rypL00 XML data for domain: 1rypL00

Molscript image for 1rypL00
1rypL00
PDB coordinates for domain 1rypL00

PDB 1ryp, Chain L, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.8
3.60.20.10.8.1
3.60.20.10.8.1.1
3.60.20.10.8.1.1.1
3.60.20.10.8.1.1.1.1

Segment boundaries for domain 1rypL00

Chopping figure for domain 1rypL00
DomainStart PDB ResidueStop PDB Residue
1rypL00 1 212

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.60.20.10.8.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yarH00 89.80 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 25 93 2.09 2.24
1rypH00 89.36 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 24 92 1.57 1.70
1q5qH00 86.72 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 25 92 2.44 2.64
1rypJ00 86.43 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 18 91 2.01 2.20
1rypK00 86.31 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 21 91 2.30 2.51
2fhh200 85.72 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 21 92 2.49 2.70
3h6iQ00 84.12 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 9 84 3.54 4.17
1g3kA00 83.87 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 16 79 2.29 2.89
1rypD00 83.31 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component PRE6Protein binding20S proteasome subunit alpha 4 [EC:3.4.25.1] 3.60.20.10 241 16 84 3.85 4.55
1rypC00 83.29 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component Y13Protein bindingUbiquitin-dependent protein catabolic process 3.60.20.10 244 15 82 3.97 4.82
1rypG00 82.48 Proteasome storage granuleProteasome core complex, alpha-subunit complex20S proteasome subunit alpha 7 [EC:3.4.25.1]Protein bindingProteasome component C1 3.60.20.10 244 13 83 3.55 4.27
1rypB00 82.36 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 13 79 3.58 4.52
1rypA00 82.21 Proteasome storage granuleProteasome core complex, alpha-subunit complexProtein bindingProteasome component C7-alphaUbiquitin-dependent protein catabolic process 3.60.20.10 243 14 82 3.71 4.49
Displaying entries 1 to 13 (page 1 of 1)


Domain ATOM Sequence

>pdb|1rypL00
TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS
KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS
ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG    

Domain COMBS Sequence

>pdb|1rypL00
TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS
KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS
ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"