CATH Domain: 1rypJ00 XML data for domain: 1rypJ00

Molscript image for 1rypJ00
1rypJ00
PDB coordinates for domain 1rypJ00

PDB 1ryp, Chain J, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.14
3.60.20.10.14.1
3.60.20.10.14.1.1
3.60.20.10.14.1.1.1
3.60.20.10.14.1.1.1.1

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Segment boundaries for domain 1rypJ00

Chopping figure for domain 1rypJ00
DomainStart PDB ResidueStop PDB Residue
1rypJ00 -8 196

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.60.20.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yarH00 89.94 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 22 93 1.60 1.71
1rypK00 86.27 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 19 95 2.33 2.44
1q5qH00 85.16 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 20 87 2.58 2.95
2fhh200 85.05 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 17 88 2.68 3.04
3h6iQ00 84.25 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 15 85 3.06 3.57
1g3kA00 83.76 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 14 82 2.73 3.31
1rypB00 81.63 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 15 78 3.77 4.83
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rypJ00
SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA
IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE
DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rypJ00
SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA
IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE
DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"