CATH Domain: 1rypI00 XML data for domain: 1rypI00

Molscript image for 1rypI00
1rypI00
PDB coordinates for domain 1rypI00

PDB 1ryp, Chain I, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.3
3.60.20.10.3.1
3.60.20.10.3.1.1
3.60.20.10.3.1.1.1
3.60.20.10.3.1.1.1.1

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Segment boundaries for domain 1rypI00

Chopping figure for domain 1rypI00
DomainStart PDB ResidueStop PDB Residue
1rypI00 1 222

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.60.20.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yarH00 89.56 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 27 86 1.51 1.74
1rypH00 88.81 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 26 86 2.25 2.59
1rypJ00 86.92 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 16 86 1.70 1.97
1rypK00 86.51 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 20 86 2.14 2.47
1yarA00 85.87 Proteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]ProteasomeThermoplasma acidophilum 3.60.20.10 221 17 85 3.38 3.97
1rypF00 84.21 Ubiquitin-dependent protein catabolic processProteasome storage granule20S proteasome subunit alpha 6 [EC:3.4.25.1]Proteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 233 17 80 2.77 3.43
3h6iQ00 83.50 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 12 82 3.69 4.45
1g3kA00 83.22 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 21 75 2.33 3.10
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rypI00
TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL
QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQ
AGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rypI00
TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL
QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQ
AGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"