CATH Domain: 1rypG00 XML data for domain: 1rypG00

Molscript image for 1rypG00
1rypG00
PDB coordinates for domain 1rypG00

PDB 1ryp, Chain G, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.12
3.60.20.10.12.1
3.60.20.10.12.1.1
3.60.20.10.12.1.1.1
3.60.20.10.12.1.1.1.1

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Segment boundaries for domain 1rypG00

Chopping figure for domain 1rypG00
DomainStart PDB ResidueStop PDB Residue
1rypG00 4 247

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.60.20.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rypB00 88.70 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 31 92 3.76 4.05
1yarH00 84.44 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 21 81 3.24 3.95
3h6iQ00 84.05 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 16 86 3.04 3.50
1rypJ00 82.86 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 12 81 3.77 4.62
1rypK00 82.72 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 14 79 2.66 3.33
1rypH00 82.46 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 15 82 3.57 4.31
1q5qH00 82.27 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 16 83 3.05 3.67
2fhh200 82.20 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 14 83 3.28 3.94
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rypG00
GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD
GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA
TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ
KEIN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rypG00
GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD
GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA
TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ
KEIN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"