CATH Domain: 1rypF00 XML data for domain: 1rypF00

Molscript image for 1rypF00
1rypF00
PDB coordinates for domain 1rypF00

PDB 1ryp, Chain F, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.7
3.60.20.10.7.1
3.60.20.10.7.1.1
3.60.20.10.7.1.1.1
3.60.20.10.7.1.1.1.1

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Segment boundaries for domain 1rypF00

Chopping figure for domain 1rypF00
DomainStart PDB ResidueStop PDB Residue
1rypF00 2 234

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.60.20.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rypG00 88.71 Proteasome storage granuleProteasome core complex, alpha-subunit complex20S proteasome subunit alpha 7 [EC:3.4.25.1]Protein bindingProteasome component C1 3.60.20.10 244 28 94 2.52 2.66
1rypD00 88.53 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component PRE6Protein binding20S proteasome subunit alpha 4 [EC:3.4.25.1] 3.60.20.10 241 30 93 2.91 3.10
1rypC00 88.05 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component Y13Protein bindingUbiquitin-dependent protein catabolic process 3.60.20.10 244 30 93 2.87 3.06
1rypB00 87.98 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 27 91 3.96 4.34
1rypA00 87.90 Proteasome storage granuleProteasome core complex, alpha-subunit complexProtein bindingProteasome component C7-alphaUbiquitin-dependent protein catabolic process 3.60.20.10 243 21 94 2.09 2.22
1yarH00 85.26 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 21 82 2.67 3.22
3h6iQ00 85.16 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 14 89 2.31 2.58
1rypL00 83.04 Proteasome core complex, beta-subunit complexUbiquitin-dependent protein catabolic processProteasome component PRE2Saccharomyces cerevisiaeProteasome 3.60.20.10 212 15 82 3.05 3.68
1rypH00 82.95 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 12 84 3.55 4.20
1q5qH00 82.72 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 14 84 2.96 3.52
1rypK00 82.71 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 19 81 2.34 2.87
2fhh200 82.62 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 14 84 3.16 3.76
1rypJ00 80.79 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 15 82 3.42 4.13
1g3kA00 79.32 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 13 71 3.38 4.74
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rypF00
FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA
RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI
GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rypF00
FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA
RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI
GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"