CATH Domain: 1rypB00 XML data for domain: 1rypB00

Molscript image for 1rypB00
1rypB00
PDB coordinates for domain 1rypB00

PDB 1ryp, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.17
3.60.20.10.17.1
3.60.20.10.17.1.1
3.60.20.10.17.1.1.1
3.60.20.10.17.1.1.1.1

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Segment boundaries for domain 1rypB00

Chopping figure for domain 1rypB00
DomainStart PDB ResidueStop PDB Residue
1rypB00 1 250

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.60.20.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3h6iQ00 85.11 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 17 85 2.30 2.69
1rypK00 83.26 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 17 76 2.43 3.16
1q5qH00 82.84 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 14 78 3.03 3.86
2fhh200 82.75 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 14 80 3.54 4.40
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rypB00
MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGP
DYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK
ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS
QEINDRLEAL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rypB00
MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGP
DYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK
ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS
QEINDRLEAL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"