CATH Domain: 1rypA00 XML data for domain: 1rypA00

Molscript image for 1rypA00
1rypA00
PDB coordinates for domain 1rypA00

PDB 1ryp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.10
3.60.20.10.10.1
3.60.20.10.10.1.1
3.60.20.10.10.1.1.1
3.60.20.10.10.1.1.1.1

[top]
Segment boundaries for domain 1rypA00

Chopping figure for domain 1rypA00
DomainStart PDB ResidueStop PDB Residue
1rypA00 10 252

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.60.20.10.10.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rypC00 88.11 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component Y13Protein bindingUbiquitin-dependent protein catabolic process 3.60.20.10 244 26 95 2.46 2.57
1rypB00 87.70 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 28 92 3.03 3.28
1rypG00 87.42 Proteasome storage granuleProteasome core complex, alpha-subunit complex20S proteasome subunit alpha 7 [EC:3.4.25.1]Protein bindingProteasome component C1 3.60.20.10 244 28 97 2.71 2.79
1yarH00 83.37 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 20 82 3.92 4.76
3h6iQ00 82.98 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 16 85 2.52 2.94
2fhh200 81.73 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 13 84 3.98 4.72
1q5qH00 81.31 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 15 84 4.08 4.84
1rypK00 81.08 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 16 79 2.95 3.71
[1]
Displaying entries 1 to 8 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1rypA00
AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD
ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT
ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIA
EQD
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1rypA00
AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD
ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT
ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIA
EQD
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"