CATH Domain: 1ryp200 XML data for domain: 1ryp200

Molscript image for 1ryp200
1ryp200
PDB coordinates for domain 1ryp200

PDB 1ryp, Chain 2, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.6
3.60.20.10.6.1
3.60.20.10.6.1.1
3.60.20.10.6.1.1.1
3.60.20.10.6.1.1.1.1

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Segment boundaries for domain 1ryp200

Chopping figure for domain 1ryp200
DomainStart PDB ResidueStop PDB Residue
1ryp200 -8 225

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.60.20.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yarH00 85.71 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 15 84 2.21 2.61
1rypJ00 85.34 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 20 86 2.57 2.96
1rypK00 84.70 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 13 84 2.20 2.62
1rypH00 84.41 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 16 87 2.37 2.71
1rypL00 83.54 Proteasome core complex, beta-subunit complexUbiquitin-dependent protein catabolic processProteasome component PRE2Saccharomyces cerevisiaeProteasome 3.60.20.10 212 17 87 2.70 3.10
2fhh200 83.42 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 16 85 2.65 3.10
1q5qH00 83.30 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 15 86 2.61 3.03
1rypF00 82.83 Ubiquitin-dependent protein catabolic processProteasome storage granule20S proteasome subunit alpha 6 [EC:3.4.25.1]Proteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 233 12 87 3.78 4.32
1rypB00 82.41 Proteasome component Y7Ubiquitin-dependent protein catabolic processProteasome storage granuleProteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 250 14 81 3.59 4.42
1rypG00 82.36 Proteasome storage granuleProteasome core complex, alpha-subunit complex20S proteasome subunit alpha 7 [EC:3.4.25.1]Protein bindingProteasome component C1 3.60.20.10 244 14 84 3.41 4.04
3h6iQ00 81.88 ProteasomeProteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]Mycobacterium tuberculosis 3.60.20.10 218 12 84 3.92 4.64
1g3kA00 80.91 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 17 71 3.09 4.31
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ryp200
TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL
ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD
RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYGTQKI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ryp200
TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL
ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD
RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYGTQKI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"